Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G478600.1 | Wheat | mitochondrion, plastid | 95.9 | 97.5 |
| TraesCS5D01G479700.1 | Wheat | plastid | 86.89 | 86.18 |
| HORVU5Hr1G111330.4 | Barley | plastid | 91.8 | 68.29 |
| Os03t0595300-01 | Rice | plastid | 63.11 | 65.25 |
| EER93849 | Sorghum | plastid | 57.38 | 60.34 |
| GSMUA_Achr4P32980_001 | Banana | plastid | 54.92 | 59.29 |
| Zm00001d033150_P001 | Maize | plastid | 58.2 | 56.8 |
| PGSC0003DMT400048484 | Potato | plastid | 52.46 | 55.65 |
| Solyc05g024430.2.1 | Tomato | plastid | 51.64 | 54.78 |
| VIT_12s0057g01000.t01 | Wine grape | plastid | 52.46 | 54.24 |
| Bra015164.1-P | Field mustard | plastid | 50.82 | 50.0 |
| AT4G13500.1 | Thale cress | plastid | 50.82 | 49.6 |
| KRH74058 | Soybean | plastid | 50.82 | 49.21 |
| CDY30582 | Canola | plastid | 50.0 | 49.19 |
| CDY06375 | Canola | plastid | 50.0 | 49.19 |
| KRH14055 | Soybean | plastid | 50.0 | 48.41 |
| CDY33396 | Canola | plastid | 50.0 | 48.03 |
| AT2G05310.1 | Thale cress | plastid | 49.18 | 48.0 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G466800.1 | EnsemblPlantsGene:TraesCS5A01G466800 | PANTHER:PTHR36343 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:-:645124403..645124955
Molecular Weight (calculated)
12854.7 Da
IEP (calculated)
10.937
GRAVY (calculated)
-0.094
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MALRVAPSPL LASGGGATAF ATPLTPRKRG AGLLLVSKRS RISAQLGGGG GGGGDGETKP DGKKFITREQ EPEQYWQTAG ERKGENPMMT PLPYIVIFGF
101: STPFIILAIA FANGWIKAPL IR
101: STPFIILAIA FANGWIKAPL IR
001: MAAKFRISSS SFSHRASDSS TSSSSSYSSL LALPQFFCPP SPLGFPEFKL HAKLGGGDGE VKPKDKKKFI TKEEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR
101: IFGMSTPFVI LAIAFANGWI KVPIR
Arabidopsis Description
At4g13500 [Source:UniProtKB/TrEMBL;Acc:Q9T0H1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.