CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13500.1	CDX70995	AT5G22290.1	21798944
AT4G13500.1	CDX88803	AT5G22290.1	21798944
AT4G13500.1	CDX92368	AT5G22290.1	21798944
AT4G13500.1	CDY09128	AT5G22290.1	21798944
AT4G13500.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06375	Canola	plastid	93.55	93.55
CDY33396	Canola	plastid	94.35	92.13
AT4G13500.1	Thale cress	plastid	82.26	81.6
AT2G05310.1	Thale cress	plastid	82.26	81.6
VIT_12s0057g01000.t01	Wine grape	plastid	63.71	66.95
KRH14055	Soybean	plastid	64.52	63.49
KRH74058	Soybean	plastid	63.71	62.7
Solyc05g024430.2.1	Tomato	plastid	56.45	60.87
EER93849	Sorghum	plastid	56.45	60.34
PGSC0003DMT400048484	Potato	plastid	55.65	60.0
Os03t0595300-01	Rice	plastid	56.45	59.32
GSMUA_Achr4P32980_001	Banana	plastid	50.81	55.75
Zm00001d033150_P001	Maize	plastid	54.84	54.4
TraesCS5B01G478600.1	Wheat	mitochondrion, plastid	49.19	50.83
TraesCS5A01G466800.1	Wheat	mitochondrion, plastid	49.19	50.0
TraesCS5D01G479700.1	Wheat	plastid	47.58	47.97
HORVU5Hr1G111330.4	Barley	plastid	48.39	36.59

Protein Annotations

EnsemblPlants:CDY30582	EnsemblPlantsGene:GSBRNA2T00045833001	GO:A0A078GZF4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36343	ProteinID:CDY30582	ProteinID:CDY30582.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF39E4
UniProt:A0A078GZF4	MapMan:35.2	:	:	:	:

Description

BnaC07g03990DBnaC07g03990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZF4]

Coordinates

chrLK032255:-:326570..327859

Molecular Weight (calculated)

13704.4 Da

IEP (calculated)

9.510

GRAVY (calculated)

-0.345

Length

124 amino acids

Sequence
(BLAST)

001: MAAKLHISSS FSHKANDSPT SSSSSYSSFL ALPQFLCTPF SSGFAQFKLH AKLGGGDGEV KPKEKKKFIT KEEEPEQYWQ STGEREGENP MKTPLPYIII
101: FGMSTPFVIL AIAFANGWIK VPNR

Best Arabidopsis Sequence Match ( AT2G05310.1 )
(BLAST)

001: MAAKLCIPSS SFSHRTNDSI TSSSSSYSSL LALPQFFCPP SPLGFPQFKL HAKLGGGDGE VKPKDKKKFI TKDEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJ31]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.