Factsheet for Zm00001d033150_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93849	Sorghum	plastid	65.6	70.69
Os03t0595300-01	Rice	plastid	60.0	63.56
TraesCS5D01G479700.1	Wheat	plastid	57.6	58.54
VIT_12s0057g01000.t01	Wine grape	plastid	55.2	58.47
TraesCS5A01G466800.1	Wheat	mitochondrion, plastid	56.8	58.2
TraesCS5B01G478600.1	Wheat	mitochondrion, plastid	55.2	57.5
PGSC0003DMT400048484	Potato	plastid	52.8	57.39
Bra015164.1-P	Field mustard	plastid	56.8	57.26
CDY06375	Canola	plastid	56.8	57.26
Solyc05g024430.2.1	Tomato	plastid	52.0	56.52
KRH74058	Soybean	plastid	56.8	56.35
CDY33396	Canola	plastid	56.8	55.91
GSMUA_Achr4P32980_001	Banana	plastid	50.4	55.75
KRH14055	Soybean	plastid	56.0	55.56
CDY30582	Canola	plastid	54.4	54.84
AT2G05310.1	Thale cress	plastid	54.4	54.4
AT4G13500.1	Thale cress	plastid	54.4	54.4
HORVU5Hr1G111330.4	Barley	plastid	56.0	42.68

Protein Annotations

EnsemblPlants:Zm00001d033150_P001	EnsemblPlants:Zm00001d033150_T001	EnsemblPlantsGene:Zm00001d033150	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36343	ProteinID:ONM06856.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00022189BB	UniProt:A0A1D6KWL1
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:252138719..252139759

Molecular Weight (calculated)

13499.5 Da

IEP (calculated)

10.750

GRAVY (calculated)

-0.190

Length

125 amino acids

Sequence
(BLAST)

001: MHTNPAMAKA APPLLAAGSR TAITAQQPSS RKGAAGTGLF CSRAIVSKRT RVTAKLGDGE LKPAGKRKFI TKEEEPEQYW QTAGEREGEN PMMTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPVR

Best Arabidopsis Sequence Match ( AT2G05310.1 )
(BLAST)

001: MAAKLCIPSS SFSHRTNDSI TSSSSSYSSL LALPQFFCPP SPLGFPQFKL HAKLGGGDGE VKPKDKKKFI TKDEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJ31]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.