Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 3
- plasma membrane 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G13500.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015164.1-P | Field mustard | plastid | 66.95 | 63.71 |
| CDY06375 | Canola | plastid | 66.95 | 63.71 |
| CDY30582 | Canola | plastid | 66.95 | 63.71 |
| KRH14055 | Soybean | plastid | 67.8 | 63.49 |
| AT4G13500.1 | Thale cress | plastid | 66.95 | 63.2 |
| KRH74058 | Soybean | plastid | 66.95 | 62.7 |
| CDY33396 | Canola | plastid | 66.95 | 62.2 |
| EER93849 | Sorghum | plastid | 61.02 | 62.07 |
| AT2G05310.1 | Thale cress | plastid | 65.25 | 61.6 |
| Os03t0595300-01 | Rice | plastid | 61.02 | 61.02 |
| PGSC0003DMT400048484 | Potato | plastid | 58.47 | 60.0 |
| Solyc05g024430.2.1 | Tomato | plastid | 58.47 | 60.0 |
| GSMUA_Achr4P32980_001 | Banana | plastid | 56.78 | 59.29 |
| Zm00001d033150_P001 | Maize | plastid | 58.47 | 55.2 |
| TraesCS5B01G478600.1 | Wheat | mitochondrion, plastid | 53.39 | 52.5 |
| TraesCS5A01G466800.1 | Wheat | mitochondrion, plastid | 54.24 | 52.46 |
| TraesCS5D01G479700.1 | Wheat | plastid | 51.69 | 49.59 |
| HORVU5Hr1G111330.4 | Barley | plastid | 53.39 | 38.41 |
Protein Annotations
| ArrayExpress:VIT_12s0057g01000 | EMBL:FN595759 | EnsemblPlants:VIT_12s0057g01000.t01 | EnsemblPlantsGene:VIT_12s0057g01000 | EntrezGene:100264834 | EntrezGene:LOC100264834 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36343 | ProteinID:CBI28443 | ProteinID:CBI28443.3 |
| RefSeq:XP_002268250 | RefSeq:XP_002268250.1 | SEG:seg | TIGR:TC62083 | TMHMM:TMhelix | unigene:Vvi.1793 |
| UniParc:UPI00015CA852 | UniProt:D7TD70 | wikigene:100264834 | wikigene:LOC100264834 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr12:+:9694261..9695026
Molecular Weight (calculated)
12938.7 Da
IEP (calculated)
10.325
GRAVY (calculated)
-0.342
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKVALSSC FCTRLPLPSK SSSPSSLTHT PTSPKKRAHH FSIHAKLGGG DGEIKQGGKK KFITREEEPE QYWQTAGERE GENPMKTPLP YIIIFGMSTP
101: FVILAIAFAN GWVKVPVR
101: FVILAIAFAN GWVKVPVR
001: MAAKFRISSS SFSHRASDSS TSSSSSYSSL LALPQFFCPP SPLGFPEFKL HAKLGGGDGE VKPKDKKKFI TKEEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR
101: IFGMSTPFVI LAIAFANGWI KVPIR
Arabidopsis Description
At4g13500 [Source:UniProtKB/TrEMBL;Acc:Q9T0H1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.