Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002403.1-P | |
| Bra006619.1-P | |
| Bra020182.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G13500.1 | Bra002403.1-P | AT5G22290.1 | 21798944 |
| AT4G13500.1 | Bra006619.1-P | AT5G22290.1 | 21798944 |
| AT4G13500.1 | Bra020182.1-P | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06375 | Canola | plastid | 97.58 | 97.58 |
| CDY33396 | Canola | plastid | 99.19 | 96.85 |
| AT2G05310.1 | Thale cress | plastid | 84.68 | 84.0 |
| AT4G13500.1 | Thale cress | plastid | 83.06 | 82.4 |
| VIT_12s0057g01000.t01 | Wine grape | plastid | 63.71 | 66.95 |
| KRH14055 | Soybean | plastid | 65.32 | 64.29 |
| KRH74058 | Soybean | plastid | 64.52 | 63.49 |
| EER93849 | Sorghum | plastid | 58.87 | 62.93 |
| Solyc05g024430.2.1 | Tomato | plastid | 58.06 | 62.61 |
| PGSC0003DMT400048484 | Potato | plastid | 56.45 | 60.87 |
| Os03t0595300-01 | Rice | plastid | 56.45 | 59.32 |
| GSMUA_Achr4P32980_001 | Banana | plastid | 52.42 | 57.52 |
| Zm00001d033150_P001 | Maize | plastid | 57.26 | 56.8 |
| TraesCS5B01G478600.1 | Wheat | mitochondrion, plastid | 50.0 | 51.67 |
| TraesCS5A01G466800.1 | Wheat | mitochondrion, plastid | 50.0 | 50.82 |
| TraesCS5D01G479700.1 | Wheat | plastid | 50.0 | 50.41 |
| HORVU5Hr1G111330.4 | Barley | plastid | 49.19 | 37.2 |
Protein Annotations
| EnsemblPlants:Bra015164.1 | EnsemblPlants:Bra015164.1-P | EnsemblPlantsGene:Bra015164 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36343 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00025412A2 | UniProt:M4DF92 | MapMan:35.2 |
Description
AT2G05310 (E=5e-041) | unknown protein
Coordinates
chrA07:+:2875417..2876260
Molecular Weight (calculated)
13595.4 Da
IEP (calculated)
9.539
GRAVY (calculated)
-0.231
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKLHIPSS FSHKANASTT SSSSSYSSLL ALPQFLCTPC SSGFTQFKLH AKLGGGDGEV KPKEKKKFIT KEEEPEQYWQ SAGEREGENP MKTPLPYIII
101: FGMSTPFVIL AIAFANGWIK VPIR
101: FGMSTPFVIL AIAFANGWIK VPIR
001: MAAKLCIPSS SFSHRTNDSI TSSSSSYSSL LALPQFFCPP SPLGFPQFKL HAKLGGGDGE VKPKDKKKFI TKDEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR
101: IFGMSTPFVI LAIAFANGWI KVPIR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJ31]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.