Factsheet for Solyc05g024430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13500.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G13500.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048484	Potato	plastid	90.43	90.43
VIT_12s0057g01000.t01	Wine grape	plastid	60.0	58.47
Bra015164.1-P	Field mustard	plastid	62.61	58.06
CDY06375	Canola	plastid	62.61	58.06
AT4G13500.1	Thale cress	plastid	61.74	56.8
CDY33396	Canola	plastid	62.61	56.69
CDY30582	Canola	plastid	60.87	56.45
Os03t0595300-01	Rice	plastid	57.39	55.93
AT2G05310.1	Thale cress	plastid	59.13	54.4
KRH14055	Soybean	plastid	58.26	53.17
EER93849	Sorghum	plastid	53.04	52.59
KRH74058	Soybean	plastid	57.39	52.38
Zm00001d033150_P001	Maize	plastid	56.52	52.0
TraesCS5B01G478600.1	Wheat	mitochondrion, plastid	53.91	51.67
TraesCS5A01G466800.1	Wheat	mitochondrion, plastid	54.78	51.64
GSMUA_Achr4P32980_001	Banana	plastid	50.43	51.33
TraesCS5D01G479700.1	Wheat	plastid	51.3	47.97
HORVU5Hr1G111330.4	Barley	plastid	53.04	37.2

Protein Annotations

EnsemblPlants:Solyc05g024430.2.1	EnsemblPlantsGene:Solyc05g024430.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR36343
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002765AE5	UniProt:K4BZT0	MapMan:35.2	:

Description

No Description!

Coordinates

chr5:-:31716103..31717615

Molecular Weight (calculated)

12742.7 Da

IEP (calculated)

10.179

GRAVY (calculated)

-0.138

Length

115 amino acids

Sequence
(BLAST)

001: MAVSCALSMN VGVLPRELLS PFPQSLTSTS LKRRRTHFTV SAKLGGGEGD VKKDEKKKFI TKEQEPEQYW QSAGEKAGEN PMMTPLPYII IFGMSTPFVI
101: LAIAFANGWI KVPIR

Best Arabidopsis Sequence Match ( AT4G13500.1 )
(BLAST)

001: MAAKFRISSS SFSHRASDSS TSSSSSYSSL LALPQFFCPP SPLGFPEFKL HAKLGGGDGE VKPKDKKKFI TKEEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR

Arabidopsis Description

At4g13500 [Source:UniProtKB/TrEMBL;Acc:Q9T0H1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.