Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G05310.1 | Thale cress | plastid | 93.6 | 93.6 |
| Bra015164.1-P | Field mustard | plastid | 82.4 | 83.06 |
| CDY06375 | Canola | plastid | 81.6 | 82.26 |
| CDY30582 | Canola | plastid | 81.6 | 82.26 |
| CDY33396 | Canola | plastid | 82.4 | 81.1 |
| VIT_12s0057g01000.t01 | Wine grape | plastid | 63.2 | 66.95 |
| Solyc05g024430.2.1 | Tomato | plastid | 56.8 | 61.74 |
| PGSC0003DMT400048484 | Potato | plastid | 56.0 | 60.87 |
| EER93849 | Sorghum | plastid | 56.0 | 60.34 |
| KRH74058 | Soybean | plastid | 60.8 | 60.32 |
| KRH14055 | Soybean | plastid | 60.8 | 60.32 |
| Os03t0595300-01 | Rice | plastid | 56.8 | 60.17 |
| GSMUA_Achr4P32980_001 | Banana | plastid | 49.6 | 54.87 |
| Zm00001d033150_P001 | Maize | plastid | 54.4 | 54.4 |
| TraesCS5B01G478600.1 | Wheat | mitochondrion, plastid | 49.6 | 51.67 |
| TraesCS5A01G466800.1 | Wheat | mitochondrion, plastid | 49.6 | 50.82 |
| TraesCS5D01G479700.1 | Wheat | plastid | 47.2 | 47.97 |
| HORVU5Hr1G111330.4 | Barley | plastid | 48.8 | 37.2 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826982 | ProteinID:AEE83286.1 | ArrayExpress:AT4G13500 | EnsemblPlantsGene:AT4G13500 | RefSeq:AT4G13500 |
| TAIR:AT4G13500 | RefSeq:AT4G13500-TAIR-G | EnsemblPlants:AT4G13500.1 | TAIR:AT4G13500.1 | EMBL:BT026090 | ProteinID:CAB41108.1 |
| ProteinID:CAB78392.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0009507 | GO:GO:0009534 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_193086.1 | PO:PO:0000293 | PANTHER:PTHR36343 | UniProt:Q9T0H1 | TMHMM:TMhelix | UniParc:UPI000009CF04 |
| SEG:seg | : | : | : | : | : |
Description
At4g13500 [Source:UniProtKB/TrEMBL;Acc:Q9T0H1]
Coordinates
chr4:-:7856767..7857933
Molecular Weight (calculated)
13817.6 Da
IEP (calculated)
9.527
GRAVY (calculated)
-0.274
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKFRISSS SFSHRASDSS TSSSSSYSSL LALPQFFCPP SPLGFPEFKL HAKLGGGDGE VKPKDKKKFI TKEEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR
101: IFGMSTPFVI LAIAFANGWI KVPIR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.