Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G13500.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT4G13500.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g024430.2.1 | Tomato | plastid | 90.43 | 90.43 |
| VIT_12s0057g01000.t01 | Wine grape | plastid | 60.0 | 58.47 |
| Bra015164.1-P | Field mustard | plastid | 60.87 | 56.45 |
| CDY06375 | Canola | plastid | 60.87 | 56.45 |
| AT4G13500.1 | Thale cress | plastid | 60.87 | 56.0 |
| Os03t0595300-01 | Rice | plastid | 57.39 | 55.93 |
| CDY30582 | Canola | plastid | 60.0 | 55.65 |
| CDY33396 | Canola | plastid | 60.87 | 55.12 |
| KRH14055 | Soybean | plastid | 60.0 | 54.76 |
| AT2G05310.1 | Thale cress | plastid | 58.26 | 53.6 |
| EER93849 | Sorghum | plastid | 53.91 | 53.45 |
| KRH74058 | Soybean | plastid | 58.26 | 53.17 |
| Zm00001d033150_P001 | Maize | plastid | 57.39 | 52.8 |
| TraesCS5B01G478600.1 | Wheat | mitochondrion, plastid | 54.78 | 52.5 |
| TraesCS5A01G466800.1 | Wheat | mitochondrion, plastid | 55.65 | 52.46 |
| GSMUA_Achr4P32980_001 | Banana | plastid | 51.3 | 52.21 |
| TraesCS5D01G479700.1 | Wheat | plastid | 52.17 | 48.78 |
| HORVU5Hr1G111330.4 | Barley | plastid | 53.91 | 37.8 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400048484 | EnsemblPlantsGene:PGSC0003DMG400018833 | EntrezGene:102594065 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36343 | PGSC:PGSC0003DMG400018833 | RefSeq:XP_006342280.1 | TMHMM:TMhelix | UniParc:UPI0002963D99 | UniProt:M1BMI0 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018833]
Coordinates
chr5:+:34272809..34274497
Molecular Weight (calculated)
12686.5 Da
IEP (calculated)
10.108
GRAVY (calculated)
-0.156
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSCALSMN FGVLSRELFS PFPQYLTSTS LKRRGSHSKV SAKLGGGEGD VNKDGKKKFI TKEQEPEQYW QSAGERAGEN PMMTPLPYII IFGMSTPFVI
101: LAIAFANGWI KVPIR
101: LAIAFANGWI KVPIR
001: MAAKFRISSS SFSHRASDSS TSSSSSYSSL LALPQFFCPP SPLGFPEFKL HAKLGGGDGE VKPKDKKKFI TKEEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR
101: IFGMSTPFVI LAIAFANGWI KVPIR
Arabidopsis Description
At4g13500 [Source:UniProtKB/TrEMBL;Acc:Q9T0H1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.