Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- mitochondrion 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52280.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030395.1-P | Field mustard | mitochondrion | 99.51 | 99.51 |
| CDY45632 | Canola | mitochondrion | 99.51 | 99.51 |
| AT1G52280.1 | Thale cress | mitochondrion | 98.06 | 98.06 |
| CDY68571 | Canola | mitochondrion | 97.57 | 97.57 |
| CDY52980 | Canola | mitochondrion | 97.57 | 97.57 |
| CDY47530 | Canola | mitochondrion | 97.09 | 97.09 |
| CDY02549 | Canola | mitochondrion | 97.09 | 97.09 |
| PGSC0003DMT400006517 | Potato | mitochondrion | 91.26 | 91.71 |
| Solyc03g120750.2.1 | Tomato | nucleus, unclear | 91.26 | 91.71 |
| VIT_09s0002g04220.t01 | Wine grape | mitochondrion | 90.78 | 90.34 |
| KRH44355 | Soybean | mitochondrion | 89.81 | 89.37 |
| KRH47027 | Soybean | endoplasmic reticulum | 89.81 | 89.37 |
| TraesCS3A01G152300.1 | Wheat | mitochondrion | 80.1 | 89.19 |
| Os01t0227300-01 | Rice | plasma membrane | 88.83 | 88.41 |
| GSMUA_Achr5P06890_001 | Banana | mitochondrion | 88.35 | 87.5 |
| GSMUA_Achr9P05540_001 | Banana | mitochondrion | 87.86 | 87.44 |
| GSMUA_Achr7P14370_001 | Banana | mitochondrion | 87.86 | 87.44 |
| EES02212 | Sorghum | mitochondrion | 87.86 | 87.44 |
| TraesCS3B01G179400.1 | Wheat | plastid | 87.38 | 86.96 |
| GSMUA_Achr8P19790_001 | Banana | mitochondrion | 87.38 | 86.96 |
| TraesCS3D01G160100.2 | Wheat | plastid | 86.89 | 86.47 |
| CDY18548 | Canola | plasma membrane | 86.41 | 86.41 |
| CDX95493 | Canola | mitochondrion | 86.41 | 86.41 |
| CDY61984 | Canola | mitochondrion | 85.44 | 85.44 |
| CDX92277 | Canola | mitochondrion | 85.44 | 85.44 |
| CDX99311 | Canola | mitochondrion | 85.44 | 85.44 |
| CDX82324 | Canola | mitochondrion | 84.95 | 84.95 |
| HORVU3Hr1G030910.4 | Barley | mitochondrion | 61.16 | 84.0 |
| CDX77257 | Canola | mitochondrion | 83.98 | 83.98 |
| CDY16487 | Canola | mitochondrion | 83.5 | 83.5 |
| CDX76258 | Canola | cytosol | 36.41 | 71.43 |
| CDX91688 | Canola | mitochondrion | 70.39 | 70.73 |
| CDY41473 | Canola | mitochondrion | 70.39 | 70.73 |
| CDY48910 | Canola | mitochondrion | 70.39 | 70.39 |
| CDY56814 | Canola | cytosol | 57.28 | 70.24 |
| CDX90732 | Canola | mitochondrion | 67.48 | 67.48 |
| CDY05073 | Canola | mitochondrion | 66.99 | 66.99 |
| CDY46234 | Canola | cytosol | 63.59 | 62.38 |
| CDY15859 | Canola | cytosol | 63.59 | 62.38 |
| CDX76964 | Canola | cytosol | 62.62 | 62.02 |
| CDY31983 | Canola | endoplasmic reticulum, extracellular, golgi | 48.54 | 61.35 |
| CDX76260 | Canola | cytosol | 36.89 | 59.84 |
| CDY63374 | Canola | mitochondrion | 44.66 | 54.44 |
Protein Annotations
| MapMan:22.8.1.7 | Gene3D:3.40.50.300 | GO:A0A078DF70 | EnsemblPlants:CDX87890 | ProteinID:CDX87890 | ProteinID:CDX87890.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00147125001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF663 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EE87BD | : |
Description
BnaC06g09520D
Coordinates
chrLK031852:-:1255824..1257504
Molecular Weight (calculated)
23049.2 Da
IEP (calculated)
5.121
GRAVY (calculated)
-0.383
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFENLN
101: NWREEFLIQA GPSDPDNFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQHR
201: STGCEC
101: NWREEFLIQA GPSDPDNFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQHR
201: STGCEC
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
Arabidopsis Description
RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.