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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • vacuole 3
  • mitochondrion 4
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus, vacuole
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G52280.1 KRH22653 AT5G22290.1 21798944
AT1G52280.1 KRH26664 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH44355 Soybean mitochondrion 100.0 100.0
VIT_09s0002g04220.t01 Wine grape mitochondrion 97.1 97.1
Solyc03g120750.2.1 Tomato nucleus, unclear 94.69 95.61
PGSC0003DMT400006517 Potato mitochondrion 94.69 95.61
GSMUA_Achr7P14370_001 Banana mitochondrion 93.24 93.24
GSMUA_Achr5P06890_001 Banana mitochondrion 93.24 92.79
Os01t0227300-01 Rice plasma membrane 92.75 92.75
GSMUA_Achr8P19790_001 Banana mitochondrion 92.75 92.75
TraesCS3A01G152300.1 Wheat mitochondrion 82.13 91.89
EES02212 Sorghum mitochondrion 91.79 91.79
AT1G52280.1 Thale cress mitochondrion 91.3 91.75
TraesCS3B01G179400.1 Wheat plastid 90.82 90.82
TraesCS3D01G160100.2 Wheat plastid 90.34 90.34
AT3G16100.1 Thale cress mitochondrion 89.86 90.29
KRH29476 Soybean mitochondrion 89.86 90.29
KRH24485 Soybean mitochondrion 89.86 90.29
CDY52980 Canola mitochondrion 89.86 90.29
Bra018959.1-P Field mustard mitochondrion 89.86 90.29
GSMUA_Achr9P05540_001 Banana mitochondrion 89.86 89.86
CDY47530 Canola mitochondrion 89.37 89.81
CDY45632 Canola mitochondrion 89.37 89.81
CDY02549 Canola mitochondrion 89.37 89.81
CDX87890 Canola mitochondrion 89.37 89.81
Bra030395.1-P Field mustard mitochondrion 89.37 89.81
Bra014320.1-P Field mustard mitochondrion 89.37 89.81
CDY68571 Canola mitochondrion 88.89 89.32
HORVU3Hr1G030910.4 Barley mitochondrion 62.32 86.0
KRH35042 Soybean mitochondrion 75.85 76.21
KRG91731 Soybean mitochondrion 75.36 75.73
KRH43325 Soybean cytosol 70.05 70.05
KRH59458 Soybean endoplasmic reticulum 69.57 69.57
KRG99717 Soybean cytosol 24.15 67.57
Protein Annotations
EntrezGene:100305824EntrezGene:100783389MapMan:22.8.1.7Gene3D:3.40.50.300EMBL:ACUP02004133EMBL:ACUP02004927
EMBL:BT089619UniProt:C6SWS6EnsemblPlantsGene:GLYMA_07G004500GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0016787ProteinID:KRH44355.1EnsemblPlants:KRH47027
ProteinID:KRH47027ProteinID:KRH47027.1InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419
PANTHER:PTHR24073PANTHER:PTHR24073:SF663SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176
SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00000A587C:
Description
hypothetical protein
Coordinates
chr7:-:347407..350046
Molecular Weight (calculated)
23239.6 Da
IEP (calculated)
5.408
GRAVY (calculated)
-0.368
Length
207 amino acids
Sequence
(BLAST)
001: MASRRRMLLK VIILGDSGVG KTSLMNQYVN RKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: HWREEFLIQA SPSDPENFPF VVLGNKIDVD GGNSRVISEK KAKAWCASKG NIPYFETSAK EGFNVEAAFQ CIAKNALKNE PEEEMYLPDT IDVGGGGRQQ
201: RSTGCEC
Best Arabidopsis Sequence Match ( AT1G52280.1 )
(BLAST)
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
Arabidopsis Description
RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.