CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91731	Soybean	mitochondrion	99.51	99.51
VIT_18s0001g02250.t01	Wine grape	mitochondrion	93.2	93.66
Solyc04g072060.2.1	Tomato	plastid	92.23	93.14
Bra038371.1-P	Field mustard	mitochondrion	86.41	86.41
CDY48910	Canola	mitochondrion	86.41	86.41
CDX91688	Canola	mitochondrion	85.44	85.85
CDY41473	Canola	mitochondrion	85.44	85.85
AT1G22740.1	Thale cress	mitochondrion	82.52	83.74
Bra000689.1-P	Field mustard	mitochondrion	83.01	83.01
CDX90732	Canola	mitochondrion	83.01	83.01
CDY05073	Canola	mitochondrion	83.01	83.01
EES03521	Sorghum	mitochondrion	83.01	83.01
TraesCS3A01G248600.1	Wheat	mitochondrion	83.01	83.01
GSMUA_Achr7P23940_001	Banana	plasma membrane	82.52	82.93
Os01t0714900-01	Rice	plasma membrane	83.01	82.61
TraesCS3D01G248400.1	Wheat	mitochondrion	82.52	82.52
TraesCS3B01G277200.1	Wheat	mitochondrion	82.52	82.52
AT4G09720.3	Thale cress	mitochondrion	83.98	79.72
KRH43325	Soybean	cytosol	80.1	79.71
KRH59458	Soybean	endoplasmic reticulum	80.1	79.71
Zm00001d011717_P001	Maize	mitochondrion	72.33	79.26
OQU78358	Sorghum	cytosol	79.13	79.13
Os05t0536900-01	Rice	plastid	78.16	78.16
TraesCS1B01G374600.1	Wheat	mitochondrion	78.16	77.4
TraesCS1A01G358000.1	Wheat	mitochondrion	77.67	76.92
TraesCS1D01G362800.1	Wheat	mitochondrion	77.67	76.92
Zm00001d038842_P001	Maize	cytosol	67.48	76.8
KRH44355	Soybean	mitochondrion	76.21	75.85
KRH47027	Soybean	endoplasmic reticulum	76.21	75.85
KRH29476	Soybean	mitochondrion	75.24	75.24
KRH24485	Soybean	mitochondrion	75.24	75.24
KRG99717	Soybean	cytosol	25.73	71.62
PGSC0003DMT400079981	Potato	mitochondrion	86.41	70.63
Zm00001d036915_P002	Maize	cytosol	22.33	65.71
HORVU1Hr1G080330.4	Barley	endoplasmic reticulum	67.48	64.65
VIT_18s0001g02330.t01	Wine grape	cytosol	37.86	63.93
Zm00001d024267_P001	Maize	cytosol	33.01	61.26
Bra016372.1-P	Field mustard	plastid	85.92	50.72
Zm00001d039546_P002	Maize	cytosol	33.5	49.64
Zm00001d040564_P001	Maize	cytosol	35.44	48.34
Zm00001d047173_P001	Maize	cytosol	35.44	48.34
Zm00001d028382_P003	Maize	cytosol	40.78	46.15
Zm00001d016749_P001	Maize	cytosol	37.38	40.1

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	UniProt:A0A0R4J4C5	EMBL:ACUP02006649	EnsemblPlantsGene:GLYMA_10G220100	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EnsemblPlants:KRH35042	ProteinID:KRH35042	ProteinID:KRH35042.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF586	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00019AA905
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:45160713..45166890

Molecular Weight (calculated)

23127.4 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.309

Length

206 amino acids

Sequence
(BLAST)

001: MSLRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDTLE
101: NWHEEFLKQA NPPDPRAFPF ILLGNKIDID GGNSRVVSEK KAKDWCASKG NIPYFETSAK EDYNVDAAFL CIAKAALANE HEQDIYFQGI PEAAVPENEQ
201: RSGCAC

Best Arabidopsis Sequence Match ( AT4G09720.1 )
(BLAST)

001: MATRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSMQYKAT IGADFVTKEL QIGEKLVTLQ IWDTAGQERF QSLGAAFYRG ADCCALVYDV NVLRSFDNLE
101: TWHEEFLKQA SPSDPKTFPF IVLGNKIDVD GGSSRVVSDK KAADWCASNG NIPYFETSAK DDFNVDEAFL TIAKTALANE HEQDIYFQGI PDAVTENEPK
201: GGGCAC

Arabidopsis Description

ATRABG3ARAB GTPase homolog G3A [Source:UniProtKB/TrEMBL;Acc:F4JKR6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.