CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038842_P001	Maize	cytosol	83.5	95.03
Zm00001d036915_P002	Maize	cytosol	30.58	90.0
Os05t0536900-01	Rice	plastid	86.41	86.41
TraesCS1D01G362800.1	Wheat	mitochondrion	86.41	85.58
TraesCS1B01G374600.1	Wheat	mitochondrion	86.41	85.58
TraesCS1A01G358000.1	Wheat	mitochondrion	85.44	84.62
EES03521	Sorghum	mitochondrion	84.47	84.47
VIT_18s0001g02250.t01	Wine grape	mitochondrion	80.1	80.49
GSMUA_Achr7P23940_001	Banana	plasma membrane	79.61	80.0
Solyc04g072060.2.1	Tomato	plastid	79.13	79.9
KRH35042	Soybean	mitochondrion	79.13	79.13
KRG91731	Soybean	mitochondrion	78.64	78.64
Zm00001d024267_P001	Maize	cytosol	41.75	77.48
AT1G22740.1	Thale cress	mitochondrion	75.73	76.85
CDY41473	Canola	mitochondrion	76.21	76.59
CDX91688	Canola	mitochondrion	76.21	76.59
CDY48910	Canola	mitochondrion	74.76	74.76
CDX90732	Canola	mitochondrion	74.76	74.76
Bra038371.1-P	Field mustard	mitochondrion	74.76	74.76
Bra000689.1-P	Field mustard	mitochondrion	74.76	74.76
CDY05073	Canola	mitochondrion	74.27	74.27
HORVU1Hr1G080330.4	Barley	endoplasmic reticulum	77.18	73.95
AT4G09720.3	Thale cress	mitochondrion	75.73	71.89
EES18509	Sorghum	mitochondrion	71.36	71.36
EES02212	Sorghum	mitochondrion	70.39	70.05
Zm00001d040564_P001	Maize	cytosol	44.66	60.93
Zm00001d047173_P001	Maize	cytosol	44.66	60.93
PGSC0003DMT400079981	Potato	mitochondrion	74.27	60.71
Zm00001d028382_P003	Maize	cytosol	51.94	58.79
Zm00001d039546_P002	Maize	cytosol	38.35	56.83
VIT_18s0001g02330.t01	Wine grape	cytosol	31.07	52.46
Zm00001d016749_P001	Maize	cytosol	46.6	50.0
Bra016372.1-P	Field mustard	plastid	76.21	44.99

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	UniProt:A0A1Z5R3J5	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlants:OQU78358	ProteinID:OQU78358
ProteinID:OQU78358.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF479	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3009G212700
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000B8BA871	:

Description

hypothetical protein

Coordinates

chr9:+:55823816..55826468

Molecular Weight (calculated)

23213.5 Da

IEP (calculated)

6.020

GRAVY (calculated)

-0.359

Length

206 amino acids

Sequence
(BLAST)

001: MESWRRRTLL KVIVLGDSGV GKTSLMNQYV SKKFSQQYKA TIGADFLTKE VLIGDRLVTL QIWDTAGQER FQSLGVAFYR GADCCVLVYD VNAKRSFNTL
101: NTWHDEFLNQ ASPSDPQHFP FILVGNKIDL DGGSKRMVSE KKAREWCASK GDIPYFETSA KEDHNVDTAF LCIAKLALEH EHDQDIYFKT VAEQVPDTEQ
201: TGGCAC

Best Arabidopsis Sequence Match ( AT1G22740.1 )
(BLAST)

001: MSTRRRTLLK VIILGDSGVG KTSLMNQYVN NKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NHLKSFESLD
101: NWHNEFLTRA SPRDPMAFPF ILLGNKVDID GGNSRVVSEK KAREWCAEKG NIVYFETSAK EDYNVDDSFL CITKLALANE RDQDIYFQPD TGSVPEQRGG
201: CAC

Arabidopsis Description

RABG3BRas-related protein RABG3b [Source:UniProtKB/Swiss-Prot;Acc:O04157]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.