Factsheet for GSMUA_Achr7P23940_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03521	Sorghum	mitochondrion	86.34	85.92
TraesCS3B01G277200.1	Wheat	mitochondrion	85.85	85.44
TraesCS3D01G248400.1	Wheat	mitochondrion	85.85	85.44
Os01t0714900-01	Rice	plasma membrane	85.85	85.02
TraesCS3A01G248600.1	Wheat	mitochondrion	85.37	84.95
VIT_18s0001g02250.t01	Wine grape	mitochondrion	84.88	84.88
Solyc04g072060.2.1	Tomato	plastid	84.39	84.8
Zm00001d011717_P001	Maize	mitochondrion	76.59	83.51
KRH35042	Soybean	mitochondrion	82.93	82.52
KRG91731	Soybean	mitochondrion	82.44	82.04
CDY41473	Canola	mitochondrion	80.98	80.98
CDX91688	Canola	mitochondrion	80.49	80.49
AT1G22740.1	Thale cress	mitochondrion	79.51	80.3
OQU78358	Sorghum	cytosol	80.0	79.61
CDY48910	Canola	mitochondrion	79.51	79.13
Bra038371.1-P	Field mustard	mitochondrion	79.51	79.13
Os05t0536900-01	Rice	plastid	79.02	78.64
Zm00001d038842_P001	Maize	cytosol	67.8	76.8
TraesCS1B01G374600.1	Wheat	mitochondrion	77.07	75.96
CDY05073	Canola	mitochondrion	76.1	75.73
CDX90732	Canola	mitochondrion	76.1	75.73
Bra000689.1-P	Field mustard	mitochondrion	76.1	75.73
TraesCS1D01G362800.1	Wheat	mitochondrion	76.59	75.48
TraesCS1A01G358000.1	Wheat	mitochondrion	76.59	75.48
GSMUA_Achr8P19790_001	Banana	mitochondrion	74.63	73.91
AT4G09720.3	Thale cress	mitochondrion	78.05	73.73
GSMUA_Achr5P06890_001	Banana	mitochondrion	74.63	73.56
GSMUA_Achr7P14370_001	Banana	mitochondrion	74.15	73.43
GSMUA_Achr9P05540_001	Banana	mitochondrion	72.68	71.98
Zm00001d024267_P001	Maize	cytosol	34.63	63.96
PGSC0003DMT400079981	Potato	mitochondrion	78.54	63.89
HORVU1Hr1G080330.4	Barley	endoplasmic reticulum	66.83	63.72
GSMUA_Achr3P20490_001	Banana	cytosol, mitochondrion	56.59	63.39
Zm00001d036915_P002	Maize	cytosol	20.49	60.0
VIT_18s0001g02330.t01	Wine grape	cytosol	31.22	52.46
Zm00001d040564_P001	Maize	cytosol	37.07	50.33
Zm00001d047173_P001	Maize	cytosol	37.07	50.33
Zm00001d039546_P002	Maize	cytosol	32.68	48.2
Zm00001d028382_P003	Maize	cytosol	42.44	47.8
Bra016372.1-P	Field mustard	plastid	80.98	47.56
GSMUA_Achr3P20480_001	Banana	cytosol	17.07	44.3
Zm00001d016749_P001	Maize	cytosol	39.02	41.67

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G23940_001	EnsemblPlants:GSMUA_Achr7P23940_001	EnsemblPlants:GSMUA_Achr7T23940_001
UniProt:M0TK80	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF586	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002966CA6	SEG:seg	:

Description

Ras-related protein Rab7 [Source:GMGC_GENE;Acc:GSMUA_Achr7G23940_001]

Coordinates

chr7:+:25997075..26004011

Molecular Weight (calculated)

23090.2 Da

IEP (calculated)

5.320

GRAVY (calculated)

-0.364

Length

205 amino acids

Sequence
(BLAST)

001: MATRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFTQQYKAT IGADFVTKEI LVDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVRRSFDTLD
101: NWHDEFLNQA SPSDPTTFPF ILLGNKIDVD GGNSRVVSEK KAKEWCASRG NMPYFETSAK EDYNVDAAFL QVAQLALQHD RDQDIYFQAI PEPASQTEQR
201: GGCAC

Best Arabidopsis Sequence Match ( AT1G22740.1 )
(BLAST)

001: MSTRRRTLLK VIILGDSGVG KTSLMNQYVN NKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NHLKSFESLD
101: NWHNEFLTRA SPRDPMAFPF ILLGNKVDID GGNSRVVSEK KAREWCAEKG NIVYFETSAK EDYNVDDSFL CITKLALANE RDQDIYFQPD TGSVPEQRGG
201: CAC

Arabidopsis Description

RABG3BRas-related protein RABG3b [Source:UniProtKB/Swiss-Prot;Acc:O04157]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.