Factsheet for Solyc04g072060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
endoplasmic reticulum: 29145071

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02250.t01	Wine grape	mitochondrion	95.1	94.63
KRH35042	Soybean	mitochondrion	93.14	92.23
KRG91731	Soybean	mitochondrion	92.65	91.75
Bra038371.1-P	Field mustard	mitochondrion	86.76	85.92
CDY48910	Canola	mitochondrion	86.76	85.92
CDX91688	Canola	mitochondrion	85.29	84.88
CDY41473	Canola	mitochondrion	85.29	84.88
GSMUA_Achr7P23940_001	Banana	plasma membrane	84.8	84.39
Os01t0714900-01	Rice	plasma membrane	84.31	83.09
TraesCS3D01G248400.1	Wheat	mitochondrion	83.82	83.01
TraesCS3B01G277200.1	Wheat	mitochondrion	83.82	83.01
AT1G22740.1	Thale cress	mitochondrion	82.35	82.76
EES03521	Sorghum	mitochondrion	83.33	82.52
TraesCS3A01G248600.1	Wheat	mitochondrion	83.33	82.52
CDY05073	Canola	mitochondrion	82.35	81.55
CDX90732	Canola	mitochondrion	82.35	81.55
Bra000689.1-P	Field mustard	mitochondrion	82.35	81.55
AT4G09720.3	Thale cress	mitochondrion	85.29	80.18
Zm00001d011717_P001	Maize	mitochondrion	73.04	79.26
OQU78358	Sorghum	cytosol	79.9	79.13
Os05t0536900-01	Rice	plastid	78.43	77.67
Zm00001d038842_P001	Maize	cytosol	67.65	76.24
Solyc03g120750.2.1	Tomato	nucleus, unclear	76.47	76.1
TraesCS1B01G374600.1	Wheat	mitochondrion	76.96	75.48
PGSC0003DMT400079981	Potato	mitochondrion	93.14	75.4
TraesCS1A01G358000.1	Wheat	mitochondrion	76.47	75.0
TraesCS1D01G362800.1	Wheat	mitochondrion	76.47	75.0
Solyc01g109520.2.1	Tomato	plastid	75.0	74.27
HORVU1Hr1G080330.4	Barley	endoplasmic reticulum	67.16	63.72
Solyc04g051680.2.1	Tomato	cytosol	68.14	63.47
Zm00001d036915_P002	Maize	cytosol	21.57	62.86
Zm00001d024267_P001	Maize	cytosol	33.33	61.26
VIT_18s0001g02330.t01	Wine grape	cytosol	36.27	60.66
Bra016372.1-P	Field mustard	plastid	85.78	50.14
Zm00001d039546_P002	Maize	cytosol	33.82	49.64
Zm00001d040564_P001	Maize	cytosol	35.78	48.34
Zm00001d047173_P001	Maize	cytosol	35.78	48.34
Zm00001d028382_P003	Maize	cytosol	40.69	45.6
Zm00001d016749_P001	Maize	cytosol	37.75	40.1

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:K4BTJ3	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF586	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc04g072060.2
EnsemblPlants:Solyc04g072060.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002766C11	:	:	:

Description

No Description!

Coordinates

chr4:-:59116633..59126825

Molecular Weight (calculated)

22926.2 Da

IEP (calculated)

5.357

GRAVY (calculated)

-0.319

Length

204 amino acids

Sequence
(BLAST)

001: MSIRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMRSFDNLD
101: NWHEEFLKQA NPPDPKTFPF ILLGNKIDID GGNSRVVSEK KAKEWCTSKG IPYFETSAKE DINVDAAFLS IAKTALANEH EQDIYFQGIP EAVSETEQRG
201: GCAC

Best Arabidopsis Sequence Match ( AT4G09720.1 )
(BLAST)

001: MATRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSMQYKAT IGADFVTKEL QIGEKLVTLQ IWDTAGQERF QSLGAAFYRG ADCCALVYDV NVLRSFDNLE
101: TWHEEFLKQA SPSDPKTFPF IVLGNKIDVD GGSSRVVSDK KAADWCASNG NIPYFETSAK DDFNVDEAFL TIAKTALANE HEQDIYFQGI PDAVTENEPK
201: GGGCAC

Arabidopsis Description

ATRABG3ARAB GTPase homolog G3A [Source:UniProtKB/TrEMBL;Acc:F4JKR6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.