Factsheet for VIT_18s0001g02250.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072060.2.1	Tomato	plastid	94.63	95.1
KRH35042	Soybean	mitochondrion	93.66	93.2
KRG91731	Soybean	mitochondrion	93.17	92.72
Bra038371.1-P	Field mustard	mitochondrion	87.8	87.38
CDY48910	Canola	mitochondrion	87.8	87.38
CDX91688	Canola	mitochondrion	85.37	85.37
CDY41473	Canola	mitochondrion	85.37	85.37
GSMUA_Achr7P23940_001	Banana	plasma membrane	84.88	84.88
EES03521	Sorghum	mitochondrion	84.39	83.98
TraesCS3A01G248600.1	Wheat	mitochondrion	83.9	83.5
VIT_00s0425g00010.t01	Wine grape	cytosol	29.27	83.33
AT1G22740.1	Thale cress	mitochondrion	82.44	83.25
TraesCS3D01G248400.1	Wheat	mitochondrion	83.41	83.01
TraesCS3B01G277200.1	Wheat	mitochondrion	83.41	83.01
Os01t0714900-01	Rice	plasma membrane	83.41	82.61
CDY05073	Canola	mitochondrion	82.93	82.52
CDX90732	Canola	mitochondrion	82.93	82.52
Bra000689.1-P	Field mustard	mitochondrion	82.93	82.52
AT4G09720.3	Thale cress	mitochondrion	86.34	81.57
Zm00001d011717_P001	Maize	mitochondrion	74.63	81.38
OQU78358	Sorghum	cytosol	80.49	80.1
VIT_07s0031g01720.t01	Wine grape	mitochondrion	79.02	78.64
Os05t0536900-01	Rice	plastid	78.54	78.16
TraesCS1B01G374600.1	Wheat	mitochondrion	78.54	77.4
Zm00001d038842_P001	Maize	cytosol	68.29	77.35
TraesCS1A01G358000.1	Wheat	mitochondrion	78.05	76.92
TraesCS1D01G362800.1	Wheat	mitochondrion	78.05	76.92
VIT_09s0002g04220.t01	Wine grape	mitochondrion	76.59	75.85
VIT_03s0063g02420.t01	Wine grape	extracellular	75.61	75.24
PGSC0003DMT400079981	Potato	mitochondrion	87.8	71.43
VIT_18s0001g02330.t01	Wine grape	cytosol	40.0	67.21
VIT_06s0009g00750.t01	Wine grape	mitochondrion	28.78	64.84
HORVU1Hr1G080330.4	Barley	endoplasmic reticulum	67.8	64.65
Zm00001d024267_P001	Maize	cytosol	34.15	63.06
Zm00001d036915_P002	Maize	cytosol	21.46	62.86
Bra016372.1-P	Field mustard	plastid	85.85	50.43
Zm00001d040564_P001	Maize	cytosol	37.07	50.33
Zm00001d047173_P001	Maize	cytosol	37.07	50.33
Zm00001d039546_P002	Maize	cytosol	33.66	49.64
Zm00001d028382_P003	Maize	cytosol	41.95	47.25
Zm00001d016749_P001	Maize	cytosol	39.02	41.67

Protein Annotations

EntrezGene:100252781	wikigene:100252781	MapMan:22.8.1.7	Gene3D:3.40.50.300	ProteinID:CBI29350	ProteinID:CBI29350.3
UniProt:D7TFS7	EMBL:FN595772	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EntrezGene:LOC100252781	wikigene:LOC100252781	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF586	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGR:TC59943	TIGRFAMs:TIGR00231	UniParc:UPI00015CD2A6	ArrayExpress:VIT_18s0001g02250	EnsemblPlantsGene:VIT_18s0001g02250	EnsemblPlants:VIT_18s0001g02250.t01
unigene:Vvi.5428	RefSeq:XP_002264356	RefSeq:XP_002264356.1	RefSeq:XP_003634933	RefSeq:XP_003634933.1	:

Description

No Description!

Coordinates

chr18_random:+:2618215..2632517

Molecular Weight (calculated)

22898.1 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.310

Length

205 amino acids

Sequence
(BLAST)

001: MSARRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMRSFDTLD
101: NWHEEFLKQA NPSDPKTFPF ILLGNKIDID GGNSRVVSKK KAEDWCASKG NIPYFETSAK EDYNVDAAFL CIAKTALANE HEQDIYFQGI PEAVSETEQG
201: GGCAC

Best Arabidopsis Sequence Match ( AT4G09720.1 )
(BLAST)

001: MATRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSMQYKAT IGADFVTKEL QIGEKLVTLQ IWDTAGQERF QSLGAAFYRG ADCCALVYDV NVLRSFDNLE
101: TWHEEFLKQA SPSDPKTFPF IVLGNKIDVD GGSSRVVSDK KAADWCASNG NIPYFETSAK DDFNVDEAFL TIAKTALANE HEQDIYFQGI PDAVTENEPK
201: GGGCAC

Arabidopsis Description

ATRABG3ARAB GTPase homolog G3A [Source:UniProtKB/TrEMBL;Acc:F4JKR6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.