Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 3
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52280.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47027 | Soybean | endoplasmic reticulum | 97.1 | 97.1 |
| KRH44355 | Soybean | mitochondrion | 97.1 | 97.1 |
| Solyc03g120750.2.1 | Tomato | nucleus, unclear | 96.14 | 97.07 |
| PGSC0003DMT400006517 | Potato | mitochondrion | 96.14 | 97.07 |
| GSMUA_Achr7P14370_001 | Banana | mitochondrion | 95.17 | 95.17 |
| GSMUA_Achr5P06890_001 | Banana | mitochondrion | 95.17 | 94.71 |
| GSMUA_Achr8P19790_001 | Banana | mitochondrion | 94.2 | 94.2 |
| Os01t0227300-01 | Rice | plasma membrane | 93.24 | 93.24 |
| GSMUA_Achr9P05540_001 | Banana | mitochondrion | 92.75 | 92.75 |
| AT1G52280.1 | Thale cress | mitochondrion | 92.27 | 92.72 |
| VIT_03s0063g02420.t01 | Wine grape | extracellular | 92.27 | 92.72 |
| TraesCS3A01G152300.1 | Wheat | mitochondrion | 82.61 | 92.43 |
| TraesCS3B01G179400.1 | Wheat | plastid | 91.79 | 91.79 |
| EES02212 | Sorghum | mitochondrion | 91.79 | 91.79 |
| TraesCS3D01G160100.2 | Wheat | plastid | 91.3 | 91.3 |
| AT3G16100.1 | Thale cress | mitochondrion | 90.82 | 91.26 |
| CDY52980 | Canola | mitochondrion | 90.82 | 91.26 |
| Bra018959.1-P | Field mustard | mitochondrion | 90.82 | 91.26 |
| CDY47530 | Canola | mitochondrion | 90.34 | 90.78 |
| CDY45632 | Canola | mitochondrion | 90.34 | 90.78 |
| CDY02549 | Canola | mitochondrion | 90.34 | 90.78 |
| CDX87890 | Canola | mitochondrion | 90.34 | 90.78 |
| Bra030395.1-P | Field mustard | mitochondrion | 90.34 | 90.78 |
| Bra014320.1-P | Field mustard | mitochondrion | 90.34 | 90.78 |
| CDY68571 | Canola | mitochondrion | 89.86 | 90.29 |
| HORVU3Hr1G030910.4 | Barley | mitochondrion | 63.28 | 87.33 |
| VIT_18s0001g02250.t01 | Wine grape | mitochondrion | 75.85 | 76.59 |
| VIT_07s0031g01720.t01 | Wine grape | mitochondrion | 71.01 | 71.36 |
| VIT_00s0425g00010.t01 | Wine grape | cytosol | 24.64 | 70.83 |
| VIT_06s0009g00750.t01 | Wine grape | mitochondrion | 25.6 | 58.24 |
| VIT_18s0001g02330.t01 | Wine grape | cytosol | 30.43 | 51.64 |
Protein Annotations
| EntrezGene:100249742 | wikigene:100249742 | MapMan:22.8.1.7 | Gene3D:3.40.50.300 | ProteinID:CBI36118 | ProteinID:CBI36118.3 |
| UniProt:D7U0H2 | EMBL:FN596494 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EntrezGene:LOC100249742 | wikigene:LOC100249742 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF663 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
| TIGR:TC56305 | TIGRFAMs:TIGR00231 | UniParc:UPI00015C8889 | ArrayExpress:VIT_09s0002g04220 | EnsemblPlantsGene:VIT_09s0002g04220 | EnsemblPlants:VIT_09s0002g04220.t01 |
| unigene:Vvi.19224 | unigene:Vvi.5664 | RefSeq:XP_002284408 | RefSeq:XP_002284408.1 | : | : |
Description
No Description!
Coordinates
chr9:+:3865073..3870701
Molecular Weight (calculated)
23214.5 Da
IEP (calculated)
5.124
GRAVY (calculated)
-0.350
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRRMLLK VIILGDSGVG KTSLMNQYVN RKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKIDVD GGNSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVEAAFQ CIAKNALKNE PEEEIYLPDT IDVASGGRQQ
201: RSSGCEC
101: NWREEFLIQA SPSDPENFPF VVLGNKIDVD GGNSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVEAAFQ CIAKNALKNE PEEEIYLPDT IDVASGGRQQ
201: RSSGCEC
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
Arabidopsis Description
RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.