Factsheet for Os01t0227300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
vacuole 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, vacuole
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 18260611
plasma membrane: 18557835
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G179400.1	Wheat	plastid	96.62	96.62
EES02212	Sorghum	mitochondrion	96.62	96.62
TraesCS3A01G152300.1	Wheat	mitochondrion	85.99	96.22
TraesCS3D01G160100.2	Wheat	plastid	96.14	96.14
VIT_09s0002g04220.t01	Wine grape	mitochondrion	93.24	93.24
KRH47027	Soybean	endoplasmic reticulum	92.75	92.75
KRH44355	Soybean	mitochondrion	92.75	92.75
GSMUA_Achr7P14370_001	Banana	mitochondrion	92.75	92.75
GSMUA_Achr5P06890_001	Banana	mitochondrion	92.75	92.31
GSMUA_Achr8P19790_001	Banana	mitochondrion	92.27	92.27
Solyc03g120750.2.1	Tomato	nucleus, unclear	90.82	91.71
PGSC0003DMT400006517	Potato	mitochondrion	90.82	91.71
HORVU3Hr1G030910.4	Barley	mitochondrion	65.22	90.0
AT1G52280.1	Thale cress	mitochondrion	89.37	89.81
CDY52980	Canola	mitochondrion	88.89	89.32
CDY47530	Canola	mitochondrion	88.89	89.32
Bra014320.1-P	Field mustard	mitochondrion	88.89	89.32
CDY02549	Canola	mitochondrion	88.89	89.32
Bra018959.1-P	Field mustard	mitochondrion	88.89	89.32
GSMUA_Achr9P05540_001	Banana	mitochondrion	88.89	88.89
AT3G16100.1	Thale cress	mitochondrion	88.41	88.83
Bra030395.1-P	Field mustard	mitochondrion	88.41	88.83
CDX87890	Canola	mitochondrion	88.41	88.83
CDY45632	Canola	mitochondrion	88.41	88.83
CDY68571	Canola	mitochondrion	87.92	88.35
Os05t0516600-01	Rice	plasma membrane	86.96	87.38
Os01t0714900-01	Rice	plasma membrane	72.46	72.46
Os05t0536900-01	Rice	plastid	70.53	70.87

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	EntrezGene:4327180	EMBL:AK059958	EMBL:AK070320	ProteinID:BAD82408.1
ProteinID:BAF04384.1	ProteinID:BAS71132.1	ProteinID:EEE54155.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:Os01g0227300	EnsemblPlants:Os01t0227300-01
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF663
UniProt:Q5N7Z9	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000049EA3E	RefSeq:XP_015649338.1	:

Description

small GTP-binding protein OsRab7B1Similar to RAB7D. (Os01t0227300-01)

Coordinates

chr1:+:7044012..7047544

Molecular Weight (calculated)

23138.4 Da

IEP (calculated)

5.144

GRAVY (calculated)

-0.364

Length

207 amino acids

Sequence
(BLAST)

001: MASRRRMLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QIDDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVTKSFERLN
101: SWREEFLIQA SPSDPENFPF VVLGNKIDVD GGNSRTVSEK KAKAWCASKG NIPYFETSAK EGFNVEAAFE CIARNAIKNE PEEEIYLPDT IDVGGAGRQQ
201: RSSGCEC

Best Arabidopsis Sequence Match ( AT1G52280.1 )
(BLAST)

001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC

Arabidopsis Description

RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.