Factsheet for Os05t0516600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

vacuole: 14701929

plasma membrane: 18260611
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

gfp PMID: 14701929 doi

MY Nahm, SW Kim, D Yun, SY Lee, MJ Cho, JD Bahk

Division of Applied Life Science (BK21), Gyeongsang National University, Jinju, 660-701 Korea.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18509	Sorghum	mitochondrion	99.51	99.51
HORVU1Hr1G076530.1	Barley	mitochondrion	95.15	98.99
Zm00001d038709_P001	Maize	mitochondrion	99.51	98.09
TraesCS1D01G339700.2	Wheat	mitochondrion	98.06	98.06
TraesCS1B01G350200.1	Wheat	mitochondrion	98.06	98.06
TraesCS1A01G337800.1	Wheat	plastid	98.06	98.06
Zm00001d010733_P002	Maize	plasma membrane	99.03	95.77
Bra022360.1-P	Field mustard	mitochondrion	91.75	91.75
CDX92277	Canola	mitochondrion	91.75	91.75
CDX99311	Canola	mitochondrion	91.26	91.26
CDY61984	Canola	mitochondrion	91.26	91.26
Bra001724.1-P	Field mustard	mitochondrion	90.78	90.78
CDX82324	Canola	mitochondrion	90.78	90.78
CDX95493	Canola	mitochondrion	90.78	90.78
CDY18548	Canola	plasma membrane	90.78	90.78
AT3G18820.1	Thale cress	mitochondrion	90.29	90.29
Bra037557.1-P	Field mustard	cytosol	79.61	90.11
VIT_03s0063g02420.t01	Wine grape	extracellular	89.81	89.81
PGSC0003DMT400001904	Potato	mitochondrion	89.81	89.81
Solyc01g109520.2.1	Tomato	plastid	89.81	89.81
KRH24485	Soybean	mitochondrion	88.35	88.35
KRH29476	Soybean	mitochondrion	88.35	88.35
Os01t0227300-01	Rice	plasma membrane	87.38	86.96
AT1G49300.1	Thale cress	mitochondrion	85.44	85.44
CDY16487	Canola	mitochondrion	85.44	85.44
CDX77257	Canola	mitochondrion	84.95	84.95
Bra014179.1-P	Field mustard	mitochondrion	85.44	83.81
Os01t0714900-01	Rice	plasma membrane	74.76	74.4
Os05t0536900-01	Rice	plastid	72.33	72.33
CDY56814	Canola	cytosol	57.77	70.83
CDX76258	Canola	cytosol	35.92	70.48
Bra036456.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid	42.72	66.67
CDY31983	Canola	endoplasmic reticulum, extracellular, golgi	49.51	62.58
CDX76260	Canola	cytosol	35.92	58.27

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	EntrezGene:4339322	ProteinID:AAT01314.1	EMBL:AK111896	EMBL:AK112031
ProteinID:BAF17960.1	ProteinID:BAS94892.1	ProteinID:EEE64364.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:Os05g0516600	EnsemblPlants:Os05t0516600-01
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF663
UniProt:Q75IJ1	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000035ACC8	RefSeq:XP_015639739.1	:

Description

small GTP-binding protein OsRab7B3, GTP-binding protein OsRab7Small GTP binding protein. (Os05t0516600-01)

Coordinates

chr5:+:25620555..25623280

Molecular Weight (calculated)

22997.1 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.382

Length

206 amino acids

Sequence
(BLAST)

001: MASRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFDNLN
101: NWREEFLIQA SPSDPDNFPF VLLGNKVDVD GGNSRVVSEK KAKAWCASKG NIPYFETSAK DGTNVEEAFQ CIVKNALKNE PEEELYVPDT VDVVGGNRAQ
201: RSSGCC

Best Arabidopsis Sequence Match ( AT3G18820.1 )
(BLAST)

001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFENLN
101: NWREEFLIQA SPSDPENFPF VLIGNKVDVD DGNSRVVSEK KAKAWCASKG NIPYFETSAK VGTNVEEAFQ CIAKDALKSG EEEELYLPDT IDVGTSNQQR
201: STGCEC

Arabidopsis Description

RABG3FRas-related protein RABG3f [Source:UniProtKB/Swiss-Prot;Acc:Q9LS94]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.