CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24485	Soybean	mitochondrion	99.51	99.51
Bra022360.1-P	Field mustard	mitochondrion	95.63	95.63
CDX92277	Canola	mitochondrion	95.63	95.63
CDY18548	Canola	plasma membrane	95.63	95.63
CDX95493	Canola	mitochondrion	95.15	95.15
CDX99311	Canola	mitochondrion	95.15	95.15
Bra037557.1-P	Field mustard	cytosol	83.98	95.05
PGSC0003DMT400001904	Potato	mitochondrion	94.66	94.66
Solyc01g109520.2.1	Tomato	plastid	94.66	94.66
CDY61984	Canola	mitochondrion	94.66	94.66
Bra001724.1-P	Field mustard	mitochondrion	94.17	94.17
VIT_03s0063g02420.t01	Wine grape	extracellular	94.17	94.17
CDX82324	Canola	mitochondrion	94.17	94.17
AT3G18820.1	Thale cress	mitochondrion	93.69	93.69
CDY16487	Canola	mitochondrion	90.78	90.78
AT1G49300.1	Thale cress	mitochondrion	90.78	90.78
CDX77257	Canola	mitochondrion	90.29	90.29
HORVU1Hr1G076530.1	Barley	mitochondrion	86.41	89.9
KRH44355	Soybean	mitochondrion	90.29	89.86
KRH47027	Soybean	endoplasmic reticulum	90.29	89.86
Bra014179.1-P	Field mustard	mitochondrion	90.78	89.05
Os05t0516600-01	Rice	plasma membrane	88.35	88.35
TraesCS3A01G290200.1	Wheat	mitochondrion	87.86	87.86
TraesCS1D01G339700.2	Wheat	mitochondrion	87.86	87.86
HORVU3Hr1G071820.1	Barley	mitochondrion	87.86	87.86
TraesCS1B01G350200.1	Wheat	mitochondrion	87.86	87.86
TraesCS1A01G337800.1	Wheat	plastid	87.86	87.86
TraesCS3B01G324900.1	Wheat	golgi	87.86	87.86
TraesCS3D01G290000.1	Wheat	mitochondrion	87.86	87.86
EES18509	Sorghum	mitochondrion	87.86	87.86
Zm00001d038709_P001	Maize	mitochondrion	87.86	86.6
Zm00001d010733_P002	Maize	plasma membrane	87.38	84.51
CDY56814	Canola	cytosol	62.62	76.79
KRH35042	Soybean	mitochondrion	75.24	75.24
CDX76258	Canola	cytosol	38.35	75.24
KRG91731	Soybean	mitochondrion	74.76	74.76
Bra036456.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid	44.66	69.7
KRH43325	Soybean	cytosol	69.9	69.57
KRH59458	Soybean	endoplasmic reticulum	69.42	69.08
KRG99717	Soybean	cytosol	24.76	68.92
CDX76260	Canola	cytosol	40.78	66.14
CDY31983	Canola	endoplasmic reticulum, extracellular, golgi	51.46	65.03

Protein Annotations

EntrezGene:100795309	MapMan:22.8.1.7	Gene3D:3.40.50.300	UniProt:A0A0R4J4D0	EMBL:ACUP02006801	EnsemblPlantsGene:GLYMA_11G118800
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlants:KRH29476	ProteinID:KRH29476	ProteinID:KRH29476.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00019AA907	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:9023777..9027133

Molecular Weight (calculated)

23053.2 Da

IEP (calculated)

4.808

GRAVY (calculated)

-0.389

Length

206 amino acids

Sequence
(BLAST)

001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVIGNKIDID GGNSRVVSEK KARAWCASKG NIPYFETSAK EGLNVEEAFQ CIAKNALKSG EEEELYLPDT IDVGNSSQPR
201: ATGCEC

Best Arabidopsis Sequence Match ( AT3G18820.1 )
(BLAST)

001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFENLN
101: NWREEFLIQA SPSDPENFPF VLIGNKVDVD DGNSRVVSEK KAKAWCASKG NIPYFETSAK VGTNVEEAFQ CIAKDALKSG EEEELYLPDT IDVGTSNQQR
201: STGCEC

Arabidopsis Description

RABG3FRas-related protein RABG3f [Source:UniProtKB/Swiss-Prot;Acc:Q9LS94]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.