Factsheet for TraesCS1A01G337800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G076530.1	Barley	mitochondrion	96.12	100.0
TraesCS1B01G350200.1	Wheat	mitochondrion	100.0	100.0
TraesCS1D01G339700.2	Wheat	mitochondrion	100.0	100.0
Os05t0516600-01	Rice	plasma membrane	98.06	98.06
EES18509	Sorghum	mitochondrion	97.57	97.57
Zm00001d038709_P001	Maize	mitochondrion	97.57	96.17
TraesCS3A01G290200.1	Wheat	mitochondrion	95.63	95.63
Zm00001d010733_P002	Maize	plasma membrane	97.09	93.9
Bra022360.1-P	Field mustard	mitochondrion	90.78	90.78
CDX92277	Canola	mitochondrion	90.78	90.78
CDX99311	Canola	mitochondrion	90.29	90.29
CDY61984	Canola	mitochondrion	90.29	90.29
VIT_03s0063g02420.t01	Wine grape	extracellular	89.81	89.81
CDX82324	Canola	mitochondrion	89.81	89.81
CDX95493	Canola	mitochondrion	89.81	89.81
Bra001724.1-P	Field mustard	mitochondrion	89.81	89.81
CDY18548	Canola	plasma membrane	89.81	89.81
AT3G18820.1	Thale cress	mitochondrion	89.32	89.32
Bra037557.1-P	Field mustard	cytosol	78.64	89.01
PGSC0003DMT400001904	Potato	mitochondrion	88.83	88.83
Solyc01g109520.2.1	Tomato	plastid	88.83	88.83
TraesCS3A01G152300.1	Wheat	mitochondrion	79.61	88.65
KRH24485	Soybean	mitochondrion	88.35	88.35
KRH29476	Soybean	mitochondrion	87.86	87.86
CDY16487	Canola	mitochondrion	84.95	84.95
AT1G49300.1	Thale cress	mitochondrion	84.47	84.47
CDX77257	Canola	mitochondrion	84.47	84.47
Bra014179.1-P	Field mustard	mitochondrion	84.95	83.33
TraesCS3A01G248600.1	Wheat	mitochondrion	73.3	73.3
TraesCS1A01G358000.1	Wheat	mitochondrion	71.84	71.15
CDY56814	Canola	cytosol	57.28	70.24
CDX76258	Canola	cytosol	35.44	69.52
Bra036456.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid	42.23	65.91
CDY31983	Canola	endoplasmic reticulum, extracellular, golgi	49.51	62.58
CDX76260	Canola	cytosol	35.44	57.48

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS1A01G337800
EnsemblPlants:TraesCS1A01G337800.1	TIGR:cd01862	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:527174617..527178177

Molecular Weight (calculated)

22928.1 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.358

Length

206 amino acids

Sequence
(BLAST)

001: MASRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFDNLN
101: NWREEFLIQA SPSDPDNFPF VLLGNKVDVD GGNSRVVSEK KAKAWCASKG NIPYFETSAK DGINVEEAFQ CIVKNALKNE PEEELYMPDT VDVVGGNRGQ
201: GSSGCC

Best Arabidopsis Sequence Match ( AT3G18820.1 )
(BLAST)

001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFENLN
101: NWREEFLIQA SPSDPENFPF VLIGNKVDVD DGNSRVVSEK KAKAWCASKG NIPYFETSAK VGTNVEEAFQ CIAKDALKSG EEEELYLPDT IDVGTSNQQR
201: STGCEC

Arabidopsis Description

RABG3FRas-related protein RABG3f [Source:UniProtKB/Swiss-Prot;Acc:Q9LS94]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.