Factsheet for VIT_03s0063g02420.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109520.2.1	Tomato	plastid	95.63	95.63
PGSC0003DMT400001904	Potato	mitochondrion	95.63	95.63
CDX95493	Canola	mitochondrion	95.15	95.15
Bra022360.1-P	Field mustard	mitochondrion	94.66	94.66
KRH24485	Soybean	mitochondrion	94.66	94.66
CDX92277	Canola	mitochondrion	94.66	94.66
CDY61984	Canola	mitochondrion	94.66	94.66
CDY18548	Canola	plasma membrane	94.66	94.66
Bra001724.1-P	Field mustard	mitochondrion	94.17	94.17
KRH29476	Soybean	mitochondrion	94.17	94.17
CDX82324	Canola	mitochondrion	94.17	94.17
CDX99311	Canola	mitochondrion	94.17	94.17
Bra037557.1-P	Field mustard	cytosol	83.01	93.96
AT3G18820.1	Thale cress	mitochondrion	92.72	92.72
VIT_09s0002g04220.t01	Wine grape	mitochondrion	92.72	92.27
HORVU1Hr1G076530.1	Barley	mitochondrion	86.89	90.4
Os05t0516600-01	Rice	plasma membrane	89.81	89.81
TraesCS1D01G339700.2	Wheat	mitochondrion	89.81	89.81
TraesCS1B01G350200.1	Wheat	mitochondrion	89.81	89.81
TraesCS1A01G337800.1	Wheat	plastid	89.81	89.81
CDY16487	Canola	mitochondrion	89.32	89.32
EES18509	Sorghum	mitochondrion	89.32	89.32
AT1G49300.1	Thale cress	mitochondrion	89.32	89.32
CDX77257	Canola	mitochondrion	88.83	88.83
TraesCS3D01G290000.1	Wheat	mitochondrion	88.35	88.35
TraesCS3B01G324900.1	Wheat	golgi	88.35	88.35
TraesCS3A01G290200.1	Wheat	mitochondrion	88.35	88.35
Zm00001d038709_P001	Maize	mitochondrion	89.32	88.04
HORVU3Hr1G071820.1	Barley	mitochondrion	87.86	87.86
Bra014179.1-P	Field mustard	mitochondrion	89.32	87.62
Zm00001d010733_P002	Maize	plasma membrane	88.83	85.92
VIT_18s0001g02250.t01	Wine grape	mitochondrion	75.24	75.61
CDY56814	Canola	cytosol	61.16	75.0
CDX76258	Canola	cytosol	37.38	73.33
VIT_00s0425g00010.t01	Wine grape	cytosol	25.24	72.22
VIT_07s0031g01720.t01	Wine grape	mitochondrion	70.39	70.39
Bra036456.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid	43.2	67.42
CDX76260	Canola	cytosol	39.81	64.57
CDY31983	Canola	endoplasmic reticulum, extracellular, golgi	50.0	63.19
VIT_06s0009g00750.t01	Wine grape	mitochondrion	26.21	59.34
VIT_18s0001g02330.t01	Wine grape	cytosol	29.13	49.18

Protein Annotations

EntrezGene:100853135	wikigene:100853135	MapMan:22.8.1.7	Gene3D:3.40.50.300	UniProt:A5BFL3	EMBL:AM457818
ProteinID:CAN61313	ProteinID:CAN61313.1	ProteinID:CCB56974	ProteinID:CCB56974.1	EMBL:FN596006	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EntrezGene:LOC100853135	wikigene:LOC100853135	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC55656	TIGRFAMs:TIGR00231	UniParc:UPI0001520CAB
ArrayExpress:VIT_03s0063g02420	EnsemblPlantsGene:VIT_03s0063g02420	EnsemblPlants:VIT_03s0063g02420.t01	unigene:Vvi.6646	RefSeq:XP_003631644	RefSeq:XP_003631644.1

Description

No Description!

Coordinates

chr3:-:5657571..5662534

Molecular Weight (calculated)

23043.1 Da

IEP (calculated)

4.801

GRAVY (calculated)

-0.373

Length

206 amino acids

Sequence
(BLAST)

001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKVDVD GGNSRVVSDK KARAWCASKG NIPYFETSAK EGINVEEAFQ CIAKNALKTG EEEEIYLPDT IDVGSSSQQR
201: SSGCEC

Best Arabidopsis Sequence Match ( AT3G18820.1 )
(BLAST)

001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFENLN
101: NWREEFLIQA SPSDPENFPF VLIGNKVDVD DGNSRVVSEK KAKAWCASKG NIPYFETSAK VGTNVEEAFQ CIAKDALKSG EEEELYLPDT IDVGTSNQQR
201: STGCEC

Arabidopsis Description

RABG3FRas-related protein RABG3f [Source:UniProtKB/Swiss-Prot;Acc:Q9LS94]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.