Factsheet for Solyc01g109520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001904	Potato	mitochondrion	100.0	100.0
VIT_03s0063g02420.t01	Wine grape	extracellular	95.63	95.63
Bra022360.1-P	Field mustard	mitochondrion	95.15	95.15
CDY18548	Canola	plasma membrane	95.15	95.15
CDX92277	Canola	mitochondrion	95.15	95.15
CDY61984	Canola	mitochondrion	94.66	94.66
KRH24485	Soybean	mitochondrion	94.66	94.66
KRH29476	Soybean	mitochondrion	94.66	94.66
CDX99311	Canola	mitochondrion	94.66	94.66
CDX95493	Canola	mitochondrion	94.66	94.66
Bra037557.1-P	Field mustard	cytosol	83.5	94.51
AT3G18820.1	Thale cress	mitochondrion	94.17	94.17
CDX82324	Canola	mitochondrion	94.17	94.17
Bra001724.1-P	Field mustard	mitochondrion	94.17	94.17
CDY16487	Canola	mitochondrion	90.78	90.78
AT1G49300.1	Thale cress	mitochondrion	90.78	90.78
Solyc03g120750.2.1	Tomato	nucleus, unclear	90.29	90.73
HORVU1Hr1G076530.1	Barley	mitochondrion	86.89	90.4
CDX77257	Canola	mitochondrion	90.29	90.29
Os05t0516600-01	Rice	plasma membrane	89.81	89.81
EES18509	Sorghum	mitochondrion	89.32	89.32
Bra014179.1-P	Field mustard	mitochondrion	90.78	89.05
TraesCS1D01G339700.2	Wheat	mitochondrion	88.83	88.83
TraesCS1B01G350200.1	Wheat	mitochondrion	88.83	88.83
TraesCS1A01G337800.1	Wheat	plastid	88.83	88.83
HORVU3Hr1G071820.1	Barley	mitochondrion	88.35	88.35
TraesCS3D01G290000.1	Wheat	mitochondrion	88.35	88.35
TraesCS3B01G324900.1	Wheat	golgi	88.35	88.35
TraesCS3A01G290200.1	Wheat	mitochondrion	88.35	88.35
Zm00001d038709_P001	Maize	mitochondrion	89.32	88.04
Zm00001d010733_P002	Maize	plasma membrane	88.83	85.92
CDY56814	Canola	cytosol	62.62	76.79
CDX76258	Canola	cytosol	38.84	76.19
Solyc04g072060.2.1	Tomato	plastid	74.27	75.0
Bra036456.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid	45.15	70.45
CDX76260	Canola	cytosol	40.78	66.14
CDY31983	Canola	endoplasmic reticulum, extracellular, golgi	51.46	65.03
Solyc04g051680.2.1	Tomato	cytosol	62.62	58.9

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:K4B3G5	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc01g109520.2
EnsemblPlants:Solyc01g109520.2.1	TIGRFAMs:TIGR00231	UniParc:UPI00005D37CC	:	:	:

Description

No Description!

Coordinates

chr1:-:96449221..96452841

Molecular Weight (calculated)

23015.1 Da

IEP (calculated)

4.814

GRAVY (calculated)

-0.397

Length

206 amino acids

Sequence
(BLAST)

001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFENLN
101: NWREEFLIQA SPSDPENFPF VVLGNKVDVD GGNSRVVSEK KARAWCASKG NIPYFETSAK EGTNVEEAFQ CIAKNALKSG EEEEIYLPDT IDVAASSQQR
201: TGGCEC

Best Arabidopsis Sequence Match ( AT3G18820.1 )
(BLAST)

001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFENLN
101: NWREEFLIQA SPSDPENFPF VLIGNKVDVD DGNSRVVSEK KAKAWCASKG NIPYFETSAK VGTNVEEAFQ CIAKDALKSG EEEELYLPDT IDVGTSNQQR
201: STGCEC

Arabidopsis Description

RABG3FRas-related protein RABG3f [Source:UniProtKB/Swiss-Prot;Acc:Q9LS94]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.