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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 5
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 plasma membrane: 26746009
msms PMID: 26746009 doi
S Chen, Y Luo, G Ding, F Xu
National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037557.1-P Field mustard cytosol 88.35 100.0
CDX95493 Canola mitochondrion 99.51 99.51
CDX92277 Canola mitochondrion 99.03 99.03
CDX99311 Canola mitochondrion 98.54 98.54
CDY61984 Canola mitochondrion 97.09 97.09
AT3G18820.1 Thale cress mitochondrion 97.09 97.09
CDX82324 Canola mitochondrion 96.6 96.6
KRH24485 Soybean mitochondrion 95.63 95.63
KRH29476 Soybean mitochondrion 95.63 95.63
PGSC0003DMT400001904 Potato mitochondrion 95.15 95.15
Solyc01g109520.2.1 Tomato plastid 95.15 95.15
VIT_03s0063g02420.t01 Wine grape extracellular 94.66 94.66
CDY16487 Canola mitochondrion 92.72 92.72
CDX77257 Canola mitochondrion 92.23 92.23
HORVU1Hr1G076530.1 Barley mitochondrion 87.38 90.91
Os05t0516600-01 Rice plasma membrane 90.78 90.78
EES18509 Sorghum mitochondrion 90.29 90.29
TraesCS1A01G337800.1 Wheat plastid 89.81 89.81
TraesCS1B01G350200.1 Wheat mitochondrion 89.81 89.81
TraesCS1D01G339700.2 Wheat mitochondrion 89.81 89.81
TraesCS3A01G290200.1 Wheat mitochondrion 89.32 89.32
TraesCS3B01G324900.1 Wheat golgi 89.32 89.32
HORVU3Hr1G071820.1 Barley mitochondrion 89.32 89.32
TraesCS3D01G290000.1 Wheat mitochondrion 89.32 89.32
Zm00001d038709_P001 Maize mitochondrion 90.29 89.0
CDY52980 Canola mitochondrion 86.89 86.89
CDY47530 Canola mitochondrion 86.89 86.89
CDY02549 Canola mitochondrion 86.89 86.89
Zm00001d010733_P002 Maize plasma membrane 89.81 86.85
CDY45632 Canola mitochondrion 86.41 86.41
CDX87890 Canola mitochondrion 86.41 86.41
CDY68571 Canola mitochondrion 85.92 85.92
CDY56814 Canola cytosol 64.08 78.57
CDX76258 Canola cytosol 38.35 75.24
CDY48910 Canola mitochondrion 71.84 71.84
CDY41473 Canola mitochondrion 70.87 71.22
CDX91688 Canola mitochondrion 70.87 71.22
CDX90732 Canola mitochondrion 69.9 69.9
CDY05073 Canola mitochondrion 69.42 69.42
CDX76260 Canola cytosol 41.26 66.93
CDY31983 Canola endoplasmic reticulum, extracellular, golgi 51.46 65.03
CDX76964 Canola cytosol 65.53 64.9
CDY15859 Canola cytosol 65.53 64.29
CDY46234 Canola cytosol 65.53 64.29
CDY63374 Canola mitochondrion 46.12 56.21
Protein Annotations
MapMan:22.8.1.7Gene3D:3.40.50.300GO:A0A078G1S6UniProt:A0A078G1S6EnsemblPlants:CDY18548ProteinID:CDY18548
ProteinID:CDY18548.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00005577001InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449
PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF663SMART:SM00173SMART:SM00174SMART:SM00175
SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI0004EEEF51
Description
BnaA01g26470DBnaA01g26470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1S6]
Coordinates
chrLK032086:+:440116..442090
Molecular Weight (calculated)
23047.1 Da
IEP (calculated)
4.713
GRAVY (calculated)
-0.432
Length
206 amino acids
Sequence
(BLAST)
001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVIGNKVDVD GGNSRVVSEK KAKAWCASKG NIPYFETSAK EGTNVEEAFE CIAKNALKSG EEEELYLPDT IDVGTSNQQR
201: STGCEC
Best Arabidopsis Sequence Match ( AT3G18820.1 )
(BLAST)
001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFENLN
101: NWREEFLIQA SPSDPENFPF VLIGNKVDVD DGNSRVVSEK KAKAWCASKG NIPYFETSAK VGTNVEEAFQ CIAKDALKSG EEEELYLPDT IDVGTSNQQR
201: STGCEC
Arabidopsis Description
RABG3FRas-related protein RABG3f [Source:UniProtKB/Swiss-Prot;Acc:Q9LS94]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.