CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030274.1-P	Field mustard	cytosol	100.0	100.0
CDY46234	Canola	cytosol	99.52	99.52
CDX76964	Canola	cytosol	84.76	85.58
AT2G21880.1	Thale cress	cytosol	83.33	82.55
VIT_07s0031g01720.t01	Wine grape	mitochondrion	70.95	72.33
CDY63374	Canola	mitochondrion	56.67	70.41
KRH43325	Soybean	cytosol	69.05	70.05
KRH59458	Soybean	endoplasmic reticulum	69.05	70.05
CDY48910	Canola	mitochondrion	67.62	68.93
CDY41473	Canola	mitochondrion	67.14	68.78
CDX91688	Canola	mitochondrion	67.14	68.78
CDY05073	Canola	mitochondrion	66.19	67.48
CDX90732	Canola	mitochondrion	66.19	67.48
CDX82324	Canola	mitochondrion	65.71	66.99
CDY61984	Canola	mitochondrion	65.24	66.5
CDX92277	Canola	mitochondrion	64.76	66.02
CDX99311	Canola	mitochondrion	64.76	66.02
CDY16487	Canola	mitochondrion	64.76	66.02
CDX77257	Canola	mitochondrion	64.76	66.02
CDX95493	Canola	mitochondrion	64.29	65.53
CDY18548	Canola	plasma membrane	64.29	65.53
CDY47530	Canola	mitochondrion	62.38	63.59
CDY45632	Canola	mitochondrion	62.38	63.59
CDY52980	Canola	mitochondrion	62.38	63.59
CDX87890	Canola	mitochondrion	62.38	63.59
CDY02549	Canola	mitochondrion	62.38	63.59
PGSC0003DMT400080167	Potato	cytosol	56.67	62.96
CDY68571	Canola	mitochondrion	61.43	62.62
Solyc04g051680.2.1	Tomato	cytosol	63.81	61.19
KRG99717	Soybean	cytosol	20.95	59.46
GSMUA_Achr3P20490_001	Banana	cytosol, mitochondrion	49.52	56.83
CDX76258	Canola	cytosol	26.67	53.33
CDY56814	Canola	cytosol	41.9	52.38
CDY31983	Canola	endoplasmic reticulum, extracellular, golgi	40.48	52.15
CDX76260	Canola	cytosol	27.14	44.88
GSMUA_Achr3P20480_001	Banana	cytosol	14.29	37.97

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:A0A078FSG9	UniProt:A0A078FSG9	EnsemblPlants:CDY15859	ProteinID:CDY15859
ProteinID:CDY15859.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00090215001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF462	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002543E26

Description

BnaA04g12520DBnaA04g12520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSG9]

Coordinates

chrLK032059:+:172181..173854

Molecular Weight (calculated)

23655.0 Da

IEP (calculated)

6.128

GRAVY (calculated)

-0.384

Length

210 amino acids

Sequence
(BLAST)

001: MESLKNRTLL KVIVLGDSGV GKTSLMNQYV YKKFNRQYKA TIGADFVTKE LHIEDKAVTL QIWDTAGQER FHSLGAAFYR GADCCVLVYD VNNLKSFETL
101: NTWYMEFLKQ ANPVEPEKFP FVLIGNKTDV DGGNTRVVSD KRAVEWCGTK GNIPYYETSA KENINVDEAF LGVAHKALSN EHKQDYIYSR DLSASVTDIL
201: EEPSRPGCSC

Best Arabidopsis Sequence Match ( AT2G21880.1 )
(BLAST)

001: MDSLKNRTLL KVIVLGDSGV GKTSLMNQYV YKKFNKQYKA TIGADFVTKE LHIDEKSVTL QIWDTAGQER FQSLGAAFYR GADCCVLVYD VNNLKSFETL
101: NNWHTEFLKQ ANPMEPETFP FVLIGNKTDV DGGNSRVVSN KRAIEWCGSK GNIPYHETSA KEDTNIDEAF LSVAHIALSN ERKQSNDIYP RGQYHDSVTD
201: IIDPDQSRGC AC

Arabidopsis Description

RABG2RAB7A [Source:UniProtKB/TrEMBL;Acc:A0A178VZI8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.