Factsheet for PGSC0003DMT400080167

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g051680.2.1	Tomato	cytosol	97.88	84.47
Bra031220.1-P	Field mustard	cytosol	61.38	65.54
VIT_07s0031g01720.t01	Wine grape	mitochondrion	64.02	58.74
CDY46234	Canola	cytosol	63.49	57.14
Bra030274.1-P	Field mustard	cytosol	62.96	56.67
CDY15859	Canola	cytosol	62.96	56.67
CDX76964	Canola	cytosol	61.38	55.77
AT2G21880.1	Thale cress	cytosol	62.43	55.66
PGSC0003DMT400006517	Potato	mitochondrion	59.26	54.63
KRH43325	Soybean	cytosol	59.26	54.11
KRH59458	Soybean	endoplasmic reticulum	59.26	54.11
PGSC0003DMT400001904	Potato	mitochondrion	58.2	53.4
CDY63374	Canola	mitochondrion	47.62	53.25
KRG99717	Soybean	cytosol	20.11	51.35
GSMUA_Achr3P20490_001	Banana	cytosol, mitochondrion	48.68	50.27
PGSC0003DMT400079981	Potato	mitochondrion	62.43	46.83
GSMUA_Achr3P20480_001	Banana	cytosol	13.76	32.91

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1D335	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400031206	PGSC:PGSC0003DMG400031206	EnsemblPlants:PGSC0003DMT400080167	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF586	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00029590C9	:	:

Description

RAB7A [Source:PGSC_GENE;Acc:PGSC0003DMG400031206]

Coordinates

chr4:+:54636584..54639242

Molecular Weight (calculated)

21624.6 Da

IEP (calculated)

4.546

GRAVY (calculated)

-0.271

Length

189 amino acids

Sequence
(BLAST)

001: MSQPLRSLLK VIVLGDCGYV FKKFREQYKA TIGADFATKE LEIGERVVTL QIWDTAGQER FHSLGVAFYR GADCCILVYD VNVPKSFETL QHWHEEFIKQ
101: ADLTEPEKFP FVLIGNKVDL EYGSTEIVSE KQAKEWCGCR GNIQNFMTSA KEDYNVDVSF LCAAQLALAN EDDHNIWQAS LDEEMPSHW

Best Arabidopsis Sequence Match ( AT1G22740.1 )
(BLAST)

001: MSTRRRTLLK VIILGDSGVG KTSLMNQYVN NKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NHLKSFESLD
101: NWHNEFLTRA SPRDPMAFPF ILLGNKVDID GGNSRVVSEK KAREWCAEKG NIVYFETSAK EDYNVDDSFL CITKLALANE RDQDIYFQPD TGSVPEQRGG
201: CAC

Arabidopsis Description

RABG3BRas-related protein RABG3b [Source:UniProtKB/Swiss-Prot;Acc:O04157]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.