Factsheet for PGSC0003DMT400079981

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
vacuole 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072060.2.1	Tomato	plastid	75.4	93.14
VIT_18s0001g02250.t01	Wine grape	mitochondrion	71.43	87.8
KRH35042	Soybean	mitochondrion	70.63	86.41
KRG91731	Soybean	mitochondrion	70.24	85.92
Bra038371.1-P	Field mustard	mitochondrion	65.08	79.61
CDY48910	Canola	mitochondrion	65.08	79.61
CDX91688	Canola	mitochondrion	64.68	79.51
CDY41473	Canola	mitochondrion	64.68	79.51
Zm00001d011717_P001	Maize	mitochondrion	59.13	79.26
Os01t0714900-01	Rice	plasma membrane	64.68	78.74
GSMUA_Achr7P23940_001	Banana	plasma membrane	63.89	78.54
AT1G22740.1	Thale cress	mitochondrion	63.1	78.33
TraesCS3B01G277200.1	Wheat	mitochondrion	63.89	78.16
TraesCS3D01G248400.1	Wheat	mitochondrion	63.89	78.16
EES03521	Sorghum	mitochondrion	63.89	78.16
TraesCS3A01G248600.1	Wheat	mitochondrion	63.49	77.67
CDY05073	Canola	mitochondrion	62.3	76.21
CDX90732	Canola	mitochondrion	62.3	76.21
Bra000689.1-P	Field mustard	mitochondrion	62.3	76.21
AT4G09720.3	Thale cress	mitochondrion	64.29	74.65
OQU78358	Sorghum	cytosol	60.71	74.27
Os05t0536900-01	Rice	plastid	60.71	74.27
PGSC0003DMT400006517	Potato	mitochondrion	60.32	74.15
TraesCS1B01G374600.1	Wheat	mitochondrion	59.92	72.6
TraesCS1A01G358000.1	Wheat	mitochondrion	59.92	72.6
TraesCS1D01G362800.1	Wheat	mitochondrion	59.52	72.12
PGSC0003DMT400001904	Potato	mitochondrion	58.33	71.36
Zm00001d038842_P001	Maize	cytosol	51.19	71.27
PGSC0003DMT400080167	Potato	cytosol	46.83	62.43
HORVU1Hr1G080330.4	Barley	endoplasmic reticulum	53.17	62.33
Zm00001d024267_P001	Maize	cytosol	26.98	61.26
VIT_18s0001g02330.t01	Wine grape	cytosol	28.97	59.84
Zm00001d036915_P002	Maize	cytosol	14.68	52.86
Zm00001d040564_P001	Maize	cytosol	28.97	48.34
Zm00001d047173_P001	Maize	cytosol	28.97	48.34
Bra016372.1-P	Field mustard	plastid	65.08	46.99
Zm00001d039546_P002	Maize	cytosol	24.21	43.88
Zm00001d028382_P003	Maize	cytosol	30.56	42.31
Zm00001d016749_P001	Maize	cytosol	30.56	40.1

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1D2T1	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400031141	PGSC:PGSC0003DMG400031141	EnsemblPlants:PGSC0003DMT400079981	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF586	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002952A52	:	:

Description

Nt-rab7c protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031141]

Coordinates

chr4:-:61568524..61576469

Molecular Weight (calculated)

28842.4 Da

IEP (calculated)

9.288

GRAVY (calculated)

-0.467

Length

252 amino acids

Sequence
(BLAST)

001: MSIRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMRSFDNLD
101: NWHEEFLKQA NPPDPKTFPF ILLGNKIDID GGNSRVVSEK KAKEWCTSKG IPYFETSAKE DINVDAAFLS IAKTALANEH EQDIEKHRAT PWDELREKSL
201: KWLNGMSKER SSEHYTTSKA FRRQFQRRSK EVAVHAKADV AIRVPYLIHV VA

Best Arabidopsis Sequence Match ( AT4G09720.1 )
(BLAST)

001: MATRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSMQYKAT IGADFVTKEL QIGEKLVTLQ IWDTAGQERF QSLGAAFYRG ADCCALVYDV NVLRSFDNLE
101: TWHEEFLKQA SPSDPKTFPF IVLGNKIDVD GGSSRVVSDK KAADWCASNG NIPYFETSAK DDFNVDEAFL TIAKTALANE HEQDIYFQGI PDAVTENEPK
201: GGGCAC

Arabidopsis Description

ATRABG3ARAB GTPase homolog G3A [Source:UniProtKB/TrEMBL;Acc:F4JKR6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.