Factsheet for Os05t0536900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78358	Sorghum	cytosol	86.41	86.41
TraesCS1D01G362800.1	Wheat	mitochondrion	85.92	85.1
TraesCS1B01G374600.1	Wheat	mitochondrion	85.92	85.1
TraesCS1A01G358000.1	Wheat	mitochondrion	85.44	84.62
Os01t0714900-01	Rice	plasma membrane	84.47	84.06
Zm00001d038842_P001	Maize	cytosol	72.82	82.87
GSMUA_Achr7P23940_001	Banana	plasma membrane	78.64	79.02
VIT_18s0001g02250.t01	Wine grape	mitochondrion	78.16	78.54
Solyc04g072060.2.1	Tomato	plastid	77.67	78.43
KRH35042	Soybean	mitochondrion	78.16	78.16
KRG91731	Soybean	mitochondrion	77.67	77.67
AT1G22740.1	Thale cress	mitochondrion	75.24	76.35
Zm00001d036915_P002	Maize	cytosol	25.24	74.29
CDY41473	Canola	mitochondrion	73.79	74.15
CDX91688	Canola	mitochondrion	73.79	74.15
CDY48910	Canola	mitochondrion	73.79	73.79
Bra038371.1-P	Field mustard	mitochondrion	73.79	73.79
CDY05073	Canola	mitochondrion	73.3	73.3
CDX90732	Canola	mitochondrion	73.3	73.3
Bra000689.1-P	Field mustard	mitochondrion	73.3	73.3
Os05t0516600-01	Rice	plasma membrane	72.33	72.33
HORVU1Hr1G080330.4	Barley	endoplasmic reticulum	75.24	72.09
AT4G09720.3	Thale cress	mitochondrion	74.76	70.97
Os01t0227300-01	Rice	plasma membrane	70.87	70.53
Zm00001d024267_P001	Maize	cytosol	35.44	65.77
PGSC0003DMT400079981	Potato	mitochondrion	74.27	60.71
VIT_18s0001g02330.t01	Wine grape	cytosol	32.04	54.1
Zm00001d039546_P002	Maize	cytosol	35.44	52.52
Zm00001d040564_P001	Maize	cytosol	38.35	52.32
Zm00001d047173_P001	Maize	cytosol	38.35	52.32
Zm00001d028382_P003	Maize	cytosol	45.15	51.1
Bra016372.1-P	Field mustard	plastid	74.76	44.13
Zm00001d016749_P001	Maize	cytosol	40.29	43.23

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	EntrezGene:4339450	EMBL:AK105140	ProteinID:BAF18079.1	ProteinID:BAS95086.1
ProteinID:EEE64504.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:Os05g0536900	EnsemblPlants:Os05t0536900-01	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF479	UniProt:Q0DGE4	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0000E125B2	RefSeq:XP_015638303.1	:	:	:

Description

small GTP-binding protein OsRab7A1Similar to RAB7A. (Os05t0536900-01)

Coordinates

chr5:+:26664617..26666561

Molecular Weight (calculated)

23153.5 Da

IEP (calculated)

7.004

GRAVY (calculated)

-0.333

Length

206 amino acids

Sequence
(BLAST)

001: MASSRRRTLL KVIVLGDSGV GKTSLMNQYV NKKFSQQYKA TIGADFVTKE VLIEDRLVTL QIWDTAGQER FQSLGVAFYR GADCCMLVYD VNAKRSFNAL
101: NTWHDEFLTQ ASPSDPKHFP FILLGNKIDI DAGNRRAIPE KKAKEWCVSK GNIPYFETSA KDDYNVDSAF LCIAKLALEH EHDQDIYFKT VAQPAPDTEH
201: TSGCAC

Best Arabidopsis Sequence Match ( AT1G22740.1 )
(BLAST)

001: MSTRRRTLLK VIILGDSGVG KTSLMNQYVN NKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NHLKSFESLD
101: NWHNEFLTRA SPRDPMAFPF ILLGNKVDID GGNSRVVSEK KAREWCAEKG NIVYFETSAK EDYNVDDSFL CITKLALANE RDQDIYFQPD TGSVPEQRGG
201: CAC

Arabidopsis Description

RABG3BRas-related protein RABG3b [Source:UniProtKB/Swiss-Prot;Acc:O04157]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.