Factsheet for PGSC0003DMT400006517

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, vacuole
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52280.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G52280.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120750.2.1	Tomato	nucleus, unclear	100.0	100.0
VIT_09s0002g04220.t01	Wine grape	mitochondrion	97.07	96.14
KRH47027	Soybean	endoplasmic reticulum	95.61	94.69
KRH44355	Soybean	mitochondrion	95.61	94.69
GSMUA_Achr7P14370_001	Banana	mitochondrion	92.68	91.79
AT1G52280.1	Thale cress	mitochondrion	92.2	91.75
TraesCS3A01G152300.1	Wheat	mitochondrion	82.44	91.35
GSMUA_Achr5P06890_001	Banana	mitochondrion	92.68	91.35
Bra018959.1-P	Field mustard	mitochondrion	91.71	91.26
Bra030395.1-P	Field mustard	mitochondrion	91.71	91.26
CDX87890	Canola	mitochondrion	91.71	91.26
CDY45632	Canola	mitochondrion	91.71	91.26
CDY52980	Canola	mitochondrion	91.71	91.26
GSMUA_Achr8P19790_001	Banana	mitochondrion	91.71	90.82
Os01t0227300-01	Rice	plasma membrane	91.71	90.82
CDY47530	Canola	mitochondrion	91.22	90.78
CDY02549	Canola	mitochondrion	91.22	90.78
Bra014320.1-P	Field mustard	mitochondrion	91.22	90.78
AT3G16100.1	Thale cress	mitochondrion	91.22	90.78
CDY68571	Canola	mitochondrion	90.73	90.29
PGSC0003DMT400001904	Potato	mitochondrion	90.73	90.29
EES02212	Sorghum	mitochondrion	90.24	89.37
TraesCS3B01G179400.1	Wheat	plastid	90.24	89.37
GSMUA_Achr9P05540_001	Banana	mitochondrion	89.76	88.89
TraesCS3D01G160100.2	Wheat	plastid	89.76	88.89
HORVU3Hr1G030910.4	Barley	mitochondrion	63.9	87.33
PGSC0003DMT400079981	Potato	mitochondrion	74.15	60.32
PGSC0003DMT400080167	Potato	cytosol	54.63	59.26

Protein Annotations

EntrezGene:102587231	MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M0ZRH9	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG402002542	PGSC:PGSC0003DMG402002542	EnsemblPlants:PGSC0003DMT400006517	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002766F3D	RefSeq:XP_006343066.1

Description

Small GTPase Rab2 [Source:PGSC_GENE;Acc:PGSC0003DMG402002542]

Coordinates

chr3:-:60092854..60097567

Molecular Weight (calculated)

22970.2 Da

IEP (calculated)

4.930

GRAVY (calculated)

-0.338

Length

205 amino acids

Sequence
(BLAST)

001: MASRRRMLLK VIILGDSGVG KTSLMNQYVN RKFSNQYKAT IGADFLTKEV QFEDRLYTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFENLN
101: NWREEFLIQA SPSDPENFPF VVLGNKIDVD GGNSRVVSEK KAKAWCASKG IPYFETSAKE GFNVDAAFQC IAKNALKNEP EEEIYLPDTI DVAGGNQPRS
201: TGCEC

Best Arabidopsis Sequence Match ( AT1G52280.1 )
(BLAST)

001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC

Arabidopsis Description

RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.