Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52280.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52980 | Canola | mitochondrion | 99.03 | 99.03 |
| CDY47530 | Canola | mitochondrion | 98.54 | 98.54 |
| CDY02549 | Canola | mitochondrion | 98.54 | 98.54 |
| AT1G52280.1 | Thale cress | mitochondrion | 97.57 | 97.57 |
| CDX87890 | Canola | mitochondrion | 97.57 | 97.57 |
| CDY45632 | Canola | mitochondrion | 97.57 | 97.57 |
| Solyc03g120750.2.1 | Tomato | nucleus, unclear | 90.29 | 90.73 |
| PGSC0003DMT400006517 | Potato | mitochondrion | 90.29 | 90.73 |
| VIT_09s0002g04220.t01 | Wine grape | mitochondrion | 90.29 | 89.86 |
| KRH47027 | Soybean | endoplasmic reticulum | 89.32 | 88.89 |
| KRH44355 | Soybean | mitochondrion | 89.32 | 88.89 |
| TraesCS3A01G152300.1 | Wheat | mitochondrion | 79.61 | 88.65 |
| Os01t0227300-01 | Rice | plasma membrane | 88.35 | 87.92 |
| GSMUA_Achr5P06890_001 | Banana | mitochondrion | 87.86 | 87.02 |
| GSMUA_Achr9P05540_001 | Banana | mitochondrion | 87.38 | 86.96 |
| GSMUA_Achr7P14370_001 | Banana | mitochondrion | 87.38 | 86.96 |
| EES02212 | Sorghum | mitochondrion | 87.38 | 86.96 |
| TraesCS3B01G179400.1 | Wheat | plastid | 86.89 | 86.47 |
| GSMUA_Achr8P19790_001 | Banana | mitochondrion | 86.89 | 86.47 |
| TraesCS3D01G160100.2 | Wheat | plastid | 86.41 | 85.99 |
| CDX95493 | Canola | mitochondrion | 85.92 | 85.92 |
| CDY18548 | Canola | plasma membrane | 85.92 | 85.92 |
| CDX99311 | Canola | mitochondrion | 84.95 | 84.95 |
| CDX92277 | Canola | mitochondrion | 84.95 | 84.95 |
| CDY61984 | Canola | mitochondrion | 84.47 | 84.47 |
| CDX77257 | Canola | mitochondrion | 84.47 | 84.47 |
| CDX82324 | Canola | mitochondrion | 83.98 | 83.98 |
| CDY16487 | Canola | mitochondrion | 83.98 | 83.98 |
| HORVU3Hr1G030910.4 | Barley | mitochondrion | 60.19 | 82.67 |
| CDX76258 | Canola | cytosol | 36.41 | 71.43 |
| CDY56814 | Canola | cytosol | 57.77 | 70.83 |
| CDY41473 | Canola | mitochondrion | 70.39 | 70.73 |
| CDX91688 | Canola | mitochondrion | 70.39 | 70.73 |
| CDY48910 | Canola | mitochondrion | 69.42 | 69.42 |
| CDX90732 | Canola | mitochondrion | 66.99 | 66.99 |
| CDY05073 | Canola | mitochondrion | 66.5 | 66.5 |
| CDY46234 | Canola | cytosol | 62.62 | 61.43 |
| CDY15859 | Canola | cytosol | 62.62 | 61.43 |
| CDX76964 | Canola | cytosol | 61.65 | 61.06 |
| CDY31983 | Canola | endoplasmic reticulum, extracellular, golgi | 48.06 | 60.74 |
| CDX76260 | Canola | cytosol | 36.89 | 59.84 |
| CDY63374 | Canola | mitochondrion | 43.69 | 53.25 |
Protein Annotations
| MapMan:22.8.1.7 | Gene3D:3.40.50.300 | GO:A0A078JSF1 | UniProt:A0A078JSF1 | EnsemblPlants:CDY68571 | ProteinID:CDY68571 |
| ProteinID:CDY68571.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00075944001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF663 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EDEB18 |
Description
BnaC06g41280DBnaC06g41280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSF1]
Coordinates
chrLK037580:+:456..1909
Molecular Weight (calculated)
23098.3 Da
IEP (calculated)
5.130
GRAVY (calculated)
-0.420
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVNDV NVMKSFENLN
101: NWREEFLIQA SPSDRDNFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYMPDT IDVAGGQQQR
201: STGCEC
101: NWREEFLIQA SPSDRDNFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYMPDT IDVAGGQQQR
201: STGCEC
001: MASRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVNDV NVMKSFENLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVTEK KAKSWCASKG NIPYFETSAK DGVNVDAAFE CIAKNALKNE PEEEVYLPDT IDVAGARQQR
201: STGCEC
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVTEK KAKSWCASKG NIPYFETSAK DGVNVDAAFE CIAKNALKNE PEEEVYLPDT IDVAGARQQR
201: STGCEC
Arabidopsis Description
RABG3CRas-related protein RABG3c [Source:UniProtKB/Swiss-Prot;Acc:Q9LW76]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.