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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, nucleus

Predictor Summary:
  • nucleus 2
  • vacuole 3
  • mitochondrion 4
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, unclear
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus, vacuole
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G52280.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT1G52280.1 Solyc11g068750.1.1 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400006517 Potato mitochondrion 100.0 100.0
VIT_09s0002g04220.t01 Wine grape mitochondrion 97.07 96.14
KRH47027 Soybean endoplasmic reticulum 95.61 94.69
KRH44355 Soybean mitochondrion 95.61 94.69
GSMUA_Achr7P14370_001 Banana mitochondrion 92.68 91.79
AT1G52280.1 Thale cress mitochondrion 92.2 91.75
TraesCS3A01G152300.1 Wheat mitochondrion 82.44 91.35
GSMUA_Achr5P06890_001 Banana mitochondrion 92.68 91.35
Bra018959.1-P Field mustard mitochondrion 91.71 91.26
Bra030395.1-P Field mustard mitochondrion 91.71 91.26
CDX87890 Canola mitochondrion 91.71 91.26
CDY45632 Canola mitochondrion 91.71 91.26
CDY52980 Canola mitochondrion 91.71 91.26
GSMUA_Achr8P19790_001 Banana mitochondrion 91.71 90.82
Os01t0227300-01 Rice plasma membrane 91.71 90.82
CDY47530 Canola mitochondrion 91.22 90.78
CDY02549 Canola mitochondrion 91.22 90.78
Bra014320.1-P Field mustard mitochondrion 91.22 90.78
AT3G16100.1 Thale cress mitochondrion 91.22 90.78
CDY68571 Canola mitochondrion 90.73 90.29
Solyc01g109520.2.1 Tomato plastid 90.73 90.29
EES02212 Sorghum mitochondrion 90.24 89.37
TraesCS3B01G179400.1 Wheat plastid 90.24 89.37
GSMUA_Achr9P05540_001 Banana mitochondrion 89.76 88.89
TraesCS3D01G160100.2 Wheat plastid 89.76 88.89
HORVU3Hr1G030910.4 Barley mitochondrion 63.9 87.33
Solyc04g072060.2.1 Tomato plastid 76.1 76.47
Solyc04g051680.2.1 Tomato cytosol 62.44 58.45
Protein Annotations
MapMan:22.8.1.7Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0016787UniProt:K4BMM4InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF663SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseEnsemblPlantsGene:Solyc03g120750.2
EnsemblPlants:Solyc03g120750.2.1TIGRFAMs:TIGR00231UniParc:UPI0002766F3D:::
Description
No Description!
Coordinates
chr3:-:69027066..69031274
Molecular Weight (calculated)
22970.2 Da
IEP (calculated)
4.930
GRAVY (calculated)
-0.338
Length
205 amino acids
Sequence
(BLAST)
001: MASRRRMLLK VIILGDSGVG KTSLMNQYVN RKFSNQYKAT IGADFLTKEV QFEDRLYTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFENLN
101: NWREEFLIQA SPSDPENFPF VVLGNKIDVD GGNSRVVSEK KAKAWCASKG IPYFETSAKE GFNVDAAFQC IAKNALKNEP EEEIYLPDTI DVAGGNQPRS
201: TGCEC
Best Arabidopsis Sequence Match ( AT1G52280.1 )
(BLAST)
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
Arabidopsis Description
RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.