Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 4
- extracellular 2
- endoplasmic reticulum 2
- plasma membrane 2
- golgi 2
- mitochondrion 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52280.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT1G52280.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02549 | Canola | mitochondrion | 100.0 | 100.0 |
| Bra018959.1-P | Field mustard | mitochondrion | 99.51 | 99.51 |
| CDY52980 | Canola | mitochondrion | 99.51 | 99.51 |
| CDY68571 | Canola | mitochondrion | 98.54 | 98.54 |
| AT1G52280.1 | Thale cress | mitochondrion | 98.06 | 98.06 |
| CDX87890 | Canola | mitochondrion | 97.09 | 97.09 |
| CDY45632 | Canola | mitochondrion | 97.09 | 97.09 |
| Solyc03g120750.2.1 | Tomato | nucleus, unclear | 90.78 | 91.22 |
| PGSC0003DMT400006517 | Potato | mitochondrion | 90.78 | 91.22 |
| VIT_09s0002g04220.t01 | Wine grape | mitochondrion | 90.78 | 90.34 |
| TraesCS3A01G152300.1 | Wheat | mitochondrion | 80.58 | 89.73 |
| KRH44355 | Soybean | mitochondrion | 89.81 | 89.37 |
| KRH47027 | Soybean | endoplasmic reticulum | 89.81 | 89.37 |
| Os01t0227300-01 | Rice | plasma membrane | 89.32 | 88.89 |
| EES02212 | Sorghum | mitochondrion | 88.35 | 87.92 |
| GSMUA_Achr5P06890_001 | Banana | mitochondrion | 88.35 | 87.5 |
| GSMUA_Achr7P14370_001 | Banana | mitochondrion | 87.86 | 87.44 |
| GSMUA_Achr9P05540_001 | Banana | mitochondrion | 87.86 | 87.44 |
| TraesCS3B01G179400.1 | Wheat | plastid | 87.86 | 87.44 |
| TraesCS3D01G160100.2 | Wheat | plastid | 87.38 | 86.96 |
| GSMUA_Achr8P19790_001 | Banana | mitochondrion | 87.38 | 86.96 |
| CDY18548 | Canola | plasma membrane | 86.89 | 86.89 |
| CDX95493 | Canola | mitochondrion | 86.89 | 86.89 |
| CDX92277 | Canola | mitochondrion | 85.92 | 85.92 |
| CDX99311 | Canola | mitochondrion | 85.92 | 85.92 |
| CDY61984 | Canola | mitochondrion | 85.44 | 85.44 |
| CDX77257 | Canola | mitochondrion | 85.44 | 85.44 |
| CDY16487 | Canola | mitochondrion | 84.95 | 84.95 |
| CDX82324 | Canola | mitochondrion | 84.95 | 84.95 |
| HORVU3Hr1G030910.4 | Barley | mitochondrion | 61.16 | 84.0 |
| CDX76258 | Canola | cytosol | 37.38 | 73.33 |
| CDY56814 | Canola | cytosol | 58.74 | 72.02 |
| CDY41473 | Canola | mitochondrion | 70.87 | 71.22 |
| CDX91688 | Canola | mitochondrion | 70.87 | 71.22 |
| CDY48910 | Canola | mitochondrion | 69.9 | 69.9 |
| CDX90732 | Canola | mitochondrion | 67.48 | 67.48 |
| CDY05073 | Canola | mitochondrion | 66.99 | 66.99 |
| CDY46234 | Canola | cytosol | 63.59 | 62.38 |
| CDY15859 | Canola | cytosol | 63.59 | 62.38 |
| CDX76964 | Canola | cytosol | 62.62 | 62.02 |
| CDY31983 | Canola | endoplasmic reticulum, extracellular, golgi | 49.03 | 61.96 |
| CDX76260 | Canola | cytosol | 37.86 | 61.42 |
| CDY63374 | Canola | mitochondrion | 44.66 | 54.44 |
Protein Annotations
| MapMan:22.8.1.7 | Gene3D:3.40.50.300 | GO:A0A078I9F1 | UniProt:A0A078I9F1 | EnsemblPlants:CDY47530 | ProteinID:CDY47530 |
| ProteinID:CDY47530.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00087592001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF663 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0002545BE2 |
Description
BnaC03g69320DBnaA08g01560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9F1]
Coordinates
chrLK032720:-:22243..23899
Molecular Weight (calculated)
23152.3 Da
IEP (calculated)
5.137
GRAVY (calculated)
-0.426
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVNDV NVMKSFENLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYMPDT IDVARGQQQR
201: STGCEC
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYMPDT IDVARGQQQR
201: STGCEC
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
Arabidopsis Description
RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.