CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, vacuole
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52280.1	KRH22653	AT5G22290.1	21798944
AT1G52280.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47027	Soybean	endoplasmic reticulum	100.0	100.0
VIT_09s0002g04220.t01	Wine grape	mitochondrion	97.1	97.1
Solyc03g120750.2.1	Tomato	nucleus, unclear	94.69	95.61
PGSC0003DMT400006517	Potato	mitochondrion	94.69	95.61
GSMUA_Achr7P14370_001	Banana	mitochondrion	93.24	93.24
GSMUA_Achr5P06890_001	Banana	mitochondrion	93.24	92.79
Os01t0227300-01	Rice	plasma membrane	92.75	92.75
GSMUA_Achr8P19790_001	Banana	mitochondrion	92.75	92.75
TraesCS3A01G152300.1	Wheat	mitochondrion	82.13	91.89
EES02212	Sorghum	mitochondrion	91.79	91.79
AT1G52280.1	Thale cress	mitochondrion	91.3	91.75
TraesCS3B01G179400.1	Wheat	plastid	90.82	90.82
TraesCS3D01G160100.2	Wheat	plastid	90.34	90.34
AT3G16100.1	Thale cress	mitochondrion	89.86	90.29
KRH29476	Soybean	mitochondrion	89.86	90.29
KRH24485	Soybean	mitochondrion	89.86	90.29
CDY52980	Canola	mitochondrion	89.86	90.29
Bra018959.1-P	Field mustard	mitochondrion	89.86	90.29
GSMUA_Achr9P05540_001	Banana	mitochondrion	89.86	89.86
CDY47530	Canola	mitochondrion	89.37	89.81
CDY45632	Canola	mitochondrion	89.37	89.81
CDY02549	Canola	mitochondrion	89.37	89.81
CDX87890	Canola	mitochondrion	89.37	89.81
Bra030395.1-P	Field mustard	mitochondrion	89.37	89.81
Bra014320.1-P	Field mustard	mitochondrion	89.37	89.81
CDY68571	Canola	mitochondrion	88.89	89.32
HORVU3Hr1G030910.4	Barley	mitochondrion	62.32	86.0
KRH35042	Soybean	mitochondrion	75.85	76.21
KRG91731	Soybean	mitochondrion	75.36	75.73
KRH43325	Soybean	cytosol	70.05	70.05
KRH59458	Soybean	endoplasmic reticulum	69.57	69.57
KRG99717	Soybean	cytosol	24.15	67.57

Protein Annotations

EntrezGene:100305824	EntrezGene:100783389	MapMan:22.8.1.7	Gene3D:3.40.50.300	EMBL:ACUP02004133	EMBL:ACUP02004927
EMBL:BT089619	UniProt:C6SWS6	EnsemblPlantsGene:GLYMA_08G205300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlants:KRH44355	ProteinID:KRH44355
ProteinID:KRH44355.1	ProteinID:KRH47027.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00000A587C	:

Description

hypothetical protein

Coordinates

chr8:-:16622187..16624857

Molecular Weight (calculated)

23239.6 Da

IEP (calculated)

5.408

GRAVY (calculated)

-0.368

Length

207 amino acids

Sequence
(BLAST)

001: MASRRRMLLK VIILGDSGVG KTSLMNQYVN RKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: HWREEFLIQA SPSDPENFPF VVLGNKIDVD GGNSRVISEK KAKAWCASKG NIPYFETSAK EGFNVEAAFQ CIAKNALKNE PEEEMYLPDT IDVGGGGRQQ
201: RSTGCEC

Best Arabidopsis Sequence Match ( AT1G52280.1 )
(BLAST)

001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC

Arabidopsis Description

RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.