Factsheet for TraesCS3D01G160100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G179400.1	Wheat	plastid	99.52	99.52
TraesCS3A01G152300.1	Wheat	mitochondrion	88.41	98.92
Os01t0227300-01	Rice	plasma membrane	96.14	96.14
EES02212	Sorghum	mitochondrion	95.65	95.65
HORVU3Hr1G030910.4	Barley	mitochondrion	67.15	92.67
VIT_09s0002g04220.t01	Wine grape	mitochondrion	91.3	91.3
GSMUA_Achr7P14370_001	Banana	mitochondrion	91.3	91.3
GSMUA_Achr5P06890_001	Banana	mitochondrion	91.3	90.87
GSMUA_Achr8P19790_001	Banana	mitochondrion	90.82	90.82
KRH44355	Soybean	mitochondrion	90.34	90.34
KRH47027	Soybean	endoplasmic reticulum	90.34	90.34
PGSC0003DMT400006517	Potato	mitochondrion	88.89	89.76
Solyc03g120750.2.1	Tomato	nucleus, unclear	88.89	89.76
GSMUA_Achr9P05540_001	Banana	mitochondrion	87.92	87.92
AT1G52280.1	Thale cress	mitochondrion	87.44	87.86
CDY47530	Canola	mitochondrion	86.96	87.38
Bra014320.1-P	Field mustard	mitochondrion	86.96	87.38
CDY02549	Canola	mitochondrion	86.96	87.38
Bra018959.1-P	Field mustard	mitochondrion	86.96	87.38
CDY52980	Canola	mitochondrion	86.96	87.38
Bra030395.1-P	Field mustard	mitochondrion	86.47	86.89
AT3G16100.1	Thale cress	mitochondrion	86.47	86.89
CDX87890	Canola	mitochondrion	86.47	86.89
CDY45632	Canola	mitochondrion	86.47	86.89
CDY68571	Canola	mitochondrion	85.99	86.41
TraesCS1D01G339700.2	Wheat	mitochondrion	85.51	85.92
TraesCS3D01G290000.1	Wheat	mitochondrion	85.51	85.92
TraesCS3D01G248400.1	Wheat	mitochondrion	72.46	72.82
TraesCS1D01G362800.1	Wheat	mitochondrion	68.6	68.27

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS3D01G160100
EnsemblPlants:TraesCS3D01G160100.2	TIGR:cd01862	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:130933092..130936292

Molecular Weight (calculated)

23169.4 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.386

Length

207 amino acids

Sequence
(BLAST)

001: MASRRRMLLK VIILGDSGVG KTSLMNQYVN NKFSNQYKAT IGADFLTKEV KIDDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NITKSFEKLN
101: NWREEFLIQA SPSDPENFPF VLLGNKIDVD GGNSRTVSEK KAKAWCASKG NIPYFETSAK EGFNVEAAFE CIARNAIKNE PEEDIYLPDT IDMGGAGRQQ
201: RSSGCEC

Best Arabidopsis Sequence Match ( AT1G52280.1 )
(BLAST)

001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC

Arabidopsis Description

RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.