Factsheet for GSMUA_Achr5P06890_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, vacuole
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P14370_001	Banana	mitochondrion	96.63	97.1
GSMUA_Achr8P19790_001	Banana	mitochondrion	96.15	96.62
VIT_09s0002g04220.t01	Wine grape	mitochondrion	94.71	95.17
KRH47027	Soybean	endoplasmic reticulum	92.79	93.24
KRH44355	Soybean	mitochondrion	92.79	93.24
GSMUA_Achr9P05540_001	Banana	mitochondrion	92.79	93.24
Os01t0227300-01	Rice	plasma membrane	92.31	92.75
Solyc03g120750.2.1	Tomato	nucleus, unclear	91.35	92.68
PGSC0003DMT400006517	Potato	mitochondrion	91.35	92.68
TraesCS3A01G152300.1	Wheat	mitochondrion	81.73	91.89
TraesCS3B01G179400.1	Wheat	plastid	91.35	91.79
EES02212	Sorghum	mitochondrion	91.35	91.79
TraesCS3D01G160100.2	Wheat	plastid	90.87	91.3
AT1G52280.1	Thale cress	mitochondrion	89.42	90.29
AT3G16100.1	Thale cress	mitochondrion	88.46	89.32
Bra018959.1-P	Field mustard	mitochondrion	87.98	88.83
CDY52980	Canola	mitochondrion	87.98	88.83
Bra030395.1-P	Field mustard	mitochondrion	87.5	88.35
Bra014320.1-P	Field mustard	mitochondrion	87.5	88.35
CDY47530	Canola	mitochondrion	87.5	88.35
CDY45632	Canola	mitochondrion	87.5	88.35
CDY02549	Canola	mitochondrion	87.5	88.35
CDX87890	Canola	mitochondrion	87.5	88.35
CDY68571	Canola	mitochondrion	87.02	87.86
HORVU3Hr1G030910.4	Barley	mitochondrion	62.5	86.67
GSMUA_Achr7P23940_001	Banana	plasma membrane	73.56	74.63
GSMUA_Achr3P20490_001	Banana	cytosol, mitochondrion	50.48	57.38
GSMUA_Achr3P20480_001	Banana	cytosol	13.94	36.71

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G06890_001	EnsemblPlants:GSMUA_Achr5P06890_001	EnsemblPlants:GSMUA_Achr5T06890_001
UniProt:M0SWB8	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002950374	:	:

Description

Ras-related protein Rab7 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06890_001]

Coordinates

chr5:+:5004476..5007510

Molecular Weight (calculated)

23204.6 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.285

Length

208 amino acids

Sequence
(BLAST)

001: MASRRRMLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QIDDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLLQA SPSDPENFPF IVLGNKIDID GGNSRVVSEK KAKAWCASKG NIPYFETSAK EGLNVEAAFQ CIAMNALKNE PEEDIYLPDT IDVAGGGRQL
201: QRSSGCEC

Best Arabidopsis Sequence Match ( AT1G52280.1 )
(BLAST)

001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC

Arabidopsis Description

RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.