Factsheet for Bra014320.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 4
extracellular 2
endoplasmic reticulum 2
plasma membrane 2
golgi 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, vacuole
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52280.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G52280.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G52280.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02549	Canola	mitochondrion	100.0	100.0
Bra018959.1-P	Field mustard	mitochondrion	99.51	99.51
CDY52980	Canola	mitochondrion	99.51	99.51
AT1G52280.1	Thale cress	mitochondrion	98.06	98.06
Bra030395.1-P	Field mustard	mitochondrion	97.09	97.09
Solyc03g120750.2.1	Tomato	nucleus, unclear	90.78	91.22
PGSC0003DMT400006517	Potato	mitochondrion	90.78	91.22
VIT_09s0002g04220.t01	Wine grape	mitochondrion	90.78	90.34
TraesCS3A01G152300.1	Wheat	mitochondrion	80.58	89.73
KRH47027	Soybean	endoplasmic reticulum	89.81	89.37
KRH44355	Soybean	mitochondrion	89.81	89.37
Os01t0227300-01	Rice	plasma membrane	89.32	88.89
EES02212	Sorghum	mitochondrion	88.35	87.92
GSMUA_Achr5P06890_001	Banana	mitochondrion	88.35	87.5
GSMUA_Achr7P14370_001	Banana	mitochondrion	87.86	87.44
GSMUA_Achr9P05540_001	Banana	mitochondrion	87.86	87.44
TraesCS3B01G179400.1	Wheat	plastid	87.86	87.44
GSMUA_Achr8P19790_001	Banana	mitochondrion	87.38	86.96
TraesCS3D01G160100.2	Wheat	plastid	87.38	86.96
Bra037557.1-P	Field mustard	cytosol	76.21	86.26
Bra022360.1-P	Field mustard	mitochondrion	85.92	85.92
Bra001724.1-P	Field mustard	mitochondrion	84.95	84.95
HORVU3Hr1G030910.4	Barley	mitochondrion	61.16	84.0
Bra014179.1-P	Field mustard	mitochondrion	84.95	83.33
Bra038371.1-P	Field mustard	mitochondrion	69.9	69.9
Bra000689.1-P	Field mustard	mitochondrion	67.48	67.48
Bra036456.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid	42.72	66.67
Bra031220.1-P	Field mustard	cytosol	54.85	63.84
Bra030274.1-P	Field mustard	cytosol	63.59	62.38
Bra016372.1-P	Field mustard	plastid	71.84	42.41

Protein Annotations

MapMan:22.8.1.7	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra014320	EnsemblPlants:Bra014320.1	EnsemblPlants:Bra014320.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4DCV3	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF663	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002545BE2	:	:

Description

AT1G52280 (E=3e-116) AtRABG3d | AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding

Coordinates

chrA08:+:1663858..1665344

Molecular Weight (calculated)

23152.3 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.426

Length

206 amino acids

Sequence
(BLAST)

001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVNDV NVMKSFENLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYMPDT IDVARGQQQR
201: STGCEC

Best Arabidopsis Sequence Match ( AT1G52280.1 )
(BLAST)

001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC

Arabidopsis Description

RABG3DRas-related protein RABG3d [Source:UniProtKB/Swiss-Prot;Acc:Q9C820]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.