CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43325	Soybean	cytosol	99.03	99.03
KRG99717	Soybean	cytosol	31.88	89.19
KRH35042	Soybean	mitochondrion	79.71	80.1
KRG91731	Soybean	mitochondrion	79.23	79.61
VIT_07s0031g01720.t01	Wine grape	mitochondrion	75.85	76.21
KRH44355	Soybean	mitochondrion	69.57	69.57
KRH47027	Soybean	endoplasmic reticulum	69.57	69.57
CDY46234	Canola	cytosol	70.53	69.52
Bra031220.1-P	Field mustard	cytosol	59.42	69.49
KRH24485	Soybean	mitochondrion	69.08	69.42
KRH29476	Soybean	mitochondrion	69.08	69.42
AT2G21880.1	Thale cress	cytosol	71.01	69.34
CDY15859	Canola	cytosol	70.05	69.05
Bra030274.1-P	Field mustard	cytosol	70.05	69.05
CDX76964	Canola	cytosol	66.67	66.35
Solyc04g051680.2.1	Tomato	cytosol	63.28	59.82
PGSC0003DMT400080167	Potato	cytosol	54.11	59.26
GSMUA_Achr3P20490_001	Banana	cytosol, mitochondrion	51.69	58.47
CDY63374	Canola	mitochondrion	47.34	57.99
GSMUA_Achr3P20480_001	Banana	cytosol	14.01	36.71

Protein Annotations

EntrezGene:100810766	MapMan:22.8.1.7	Gene3D:3.40.50.300	EMBL:ACUP02003325	EnsemblPlantsGene:GLYMA_05G184600	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1K4R8	EnsemblPlants:KRH59458	ProteinID:KRH59458	ProteinID:KRH59458.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF462	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002339F7F	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:37151098..37153721

Molecular Weight (calculated)

23430.6 Da

IEP (calculated)

5.130

GRAVY (calculated)

-0.407

Length

207 amino acids

Sequence
(BLAST)

001: MDISQRKRTL LKIIVLGDSG VGKTSLMNQY VYRKFSQQYK ATIGADFVTK EIQVDDKLVT LQIWDTAGQE RFHSIGAAFY RGADCCVLVY DVNIHKTFDT
101: LNNWHDEFLK QGDMNDPEAF PFVLLGNKVD VDGGNSRRVT EKKARDWCAS RGNIPYFETS AKEGYNVEEA FLCVAKIALE NEHDQDIYFR GISEAVSEAE
201: QRSGCAC

Best Arabidopsis Sequence Match ( AT4G09720.1 )
(BLAST)

001: MATRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSMQYKAT IGADFVTKEL QIGEKLVTLQ IWDTAGQERF QSLGAAFYRG ADCCALVYDV NVLRSFDNLE
101: TWHEEFLKQA SPSDPKTFPF IVLGNKIDVD GGSSRVVSDK KAADWCASNG NIPYFETSAK DDFNVDEAFL TIAKTALANE HEQDIYFQGI PDAVTENEPK
201: GGGCAC

Arabidopsis Description

ATRABG3ARAB GTPase homolog G3A [Source:UniProtKB/TrEMBL;Acc:F4JKR6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.