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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G11740.1 CDX74635 AT5G35750.1 18642946
AT5G11740.1 CDY47297 AT5G35750.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY61442 Canola endoplasmic reticulum, extracellular, vacuole 95.38 96.88
CDX69734 Canola endoplasmic reticulum, extracellular, vacuole 92.31 93.75
CDX70418 Canola endoplasmic reticulum, extracellular, vacuole 92.31 93.75
CDX78441 Canola endoplasmic reticulum, extracellular, vacuole 92.31 93.75
CDX97142 Canola endoplasmic reticulum, extracellular, vacuole 90.77 92.19
AT5G11740.1 Thale cress endoplasmic reticulum, extracellular, vacuole 75.38 80.33
Protein Annotations
EnsemblPlants:CDX91195EnsemblPlantsGene:GSBRNA2T00152006001GO:A0A078DPF5ProteinID:CDX91195ProteinID:CDX91195.1SEG:seg
SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0004EE2D4FMapMan:35.2::
Description
BnaC02g04020D
Coordinates
chrLK031865:-:1333162..1333359
Molecular Weight (calculated)
6125.5 Da
IEP (calculated)
9.695
GRAVY (calculated)
1.286
Length
65 amino acids
Sequence
(BLAST)
1: MAISKTTTVV ALVAVIVSVV ATVASAQVEA PAPSPTSGSG AFSPSIVSAG VAAVAALVFG SALRI
Best Arabidopsis Sequence Match ( AT5G11740.1 )
(BLAST)
1: MAISKASIVV LMMVIISVVA SAQSEAPAPS PTSGSSAISA SFVSAGVAAV AALVFGSALR I
Arabidopsis Description
AGP15ATAGP15 [Source:UniProtKB/TrEMBL;Acc:C0SVP3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.