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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • plastid 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70418 Canola endoplasmic reticulum, extracellular, vacuole 96.88 96.88
CDX78441 Canola endoplasmic reticulum, extracellular, vacuole 96.88 96.88
Bra006115.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 95.31 95.31
CDX91195 Canola endoplasmic reticulum, extracellular, vacuole 92.19 90.77
CDX69734 Canola endoplasmic reticulum, extracellular, vacuole 90.62 90.62
CDY61442 Canola endoplasmic reticulum, extracellular, vacuole 90.62 90.62
AT5G11740.1 Thale cress endoplasmic reticulum, extracellular, vacuole 76.56 80.33
Protein Annotations
EnsemblPlants:CDX97142EnsemblPlantsGene:GSBRNA2T00104131001GO:A0A078E7X9ProteinID:CDX97142ProteinID:CDX97142.1SEG:seg
SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0004EE8024MapMan:35.2::
Description
BnaC09g44830D
Coordinates
chrLK031897:+:879475..880101
Molecular Weight (calculated)
6000.3 Da
IEP (calculated)
9.695
GRAVY (calculated)
1.184
Length
64 amino acids
Sequence
(BLAST)
1: MALSKSSVVA LVAVIVSVVA TVASAQSESP APSPTSGSGA FSPSIVSAGV AAVAALVFGS ALRI
Best Arabidopsis Sequence Match ( AT5G11740.1 )
(BLAST)
1: MAISKASIVV LMMVIISVVA SAQSEAPAPS PTSGSSAISA SFVSAGVAAV AALVFGSALR I
Arabidopsis Description
AGP15ATAGP15 [Source:UniProtKB/TrEMBL;Acc:C0SVP3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.