Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- plastid 1
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69734 | Canola | endoplasmic reticulum, extracellular, vacuole | 85.25 | 81.25 |
| CDX70418 | Canola | endoplasmic reticulum, extracellular, vacuole | 83.61 | 79.69 |
| CDX78441 | Canola | endoplasmic reticulum, extracellular, vacuole | 83.61 | 79.69 |
| Bra006115.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 81.97 | 78.12 |
| Bra008940.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 80.33 | 76.56 |
| Bra023339.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 80.33 | 76.56 |
| CDX97142 | Canola | endoplasmic reticulum, extracellular, vacuole | 80.33 | 76.56 |
| CDY61442 | Canola | endoplasmic reticulum, extracellular, vacuole | 80.33 | 76.56 |
| CDX91195 | Canola | endoplasmic reticulum, extracellular, vacuole | 80.33 | 75.38 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831046 | UniProt:A0A178UKK2 | EMBL:AB493746 | ProteinID:AED91716.1 | EMBL:AF195896 |
| EMBL:AF375418 | Symbol:AGP15 | ArrayExpress:AT5G11740 | EnsemblPlantsGene:AT5G11740 | RefSeq:AT5G11740 | TAIR:AT5G11740 |
| RefSeq:AT5G11740-TAIR-G | EnsemblPlants:AT5G11740.1 | TAIR:AT5G11740.1 | EMBL:AY129482 | UniProt:C0SVP3 | ProteinID:CAB87692.1 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031225 |
| RefSeq:NP_196735.1 | ProteinID:OAO94155.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | UniProt:Q9LYF6 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI00000A4F4F | SEG:seg | : | : | : |
Description
AGP15ATAGP15 [Source:UniProtKB/TrEMBL;Acc:C0SVP3]
Coordinates
chr5:+:3783930..3784963
Molecular Weight (calculated)
5849.2 Da
IEP (calculated)
9.695
GRAVY (calculated)
1.315
Length
61 amino acids
Sequence
(BLAST)
(BLAST)
1: MAISKASIVV LMMVIISVVA SAQSEAPAPS PTSGSSAISA SFVSAGVAAV AALVFGSALR I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.