CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11740.1	CDX74635	AT5G35750.1	18642946
AT5G11740.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70418	Canola	endoplasmic reticulum, extracellular, vacuole	100.0	100.0
Bra006115.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	98.44	98.44
CDX97142	Canola	endoplasmic reticulum, extracellular, vacuole	96.88	96.88
CDX69734	Canola	endoplasmic reticulum, extracellular, vacuole	93.75	93.75
CDY61442	Canola	endoplasmic reticulum, extracellular, vacuole	93.75	93.75
CDX91195	Canola	endoplasmic reticulum, extracellular, vacuole	93.75	92.31
AT5G11740.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	79.69	83.61

Protein Annotations

EnsemblPlants:CDX78441	EnsemblPlantsGene:GSBRNA2T00129828001	GO:A0A078C5X8	ProteinID:CDX78441	ProteinID:CDX78441.1	SEG:seg
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0004EE8F32	MapMan:35.2	:	:

Description

BnaA03g03530D

Coordinates

chrLK031815:+:804562..804959

Molecular Weight (calculated)

5984.3 Da

IEP (calculated)

9.695

GRAVY (calculated)

1.236

Length

64 amino acids

Sequence
(BLAST)

1: MAISKASVVA LVAVIVSVVA TVASAQSESP APSPTSGSGA FSPSIVSAGV AAVAALVFGS ALRI

Best Arabidopsis Sequence Match ( AT5G11740.1 )
(BLAST)

1: MAISKASIVV LMMVIISVVA SAQSEAPAPS PTSGSSAISA SFVSAGVAAV AALVFGSALR I

Arabidopsis Description

AGP15ATAGP15 [Source:UniProtKB/TrEMBL;Acc:C0SVP3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.