Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 6
- vacuole 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G11740.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT5G11740.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008940.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 95.31 | 95.31 |
| CDX70418 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.75 | 93.75 |
| CDX78441 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.75 | 93.75 |
| CDY61442 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.75 | 93.75 |
| CDX91195 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.75 | 92.31 |
| CDX97142 | Canola | endoplasmic reticulum, extracellular, vacuole | 90.62 | 90.62 |
| AT5G11740.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 81.25 | 85.25 |
Protein Annotations
| EnsemblPlants:CDX69734 | EnsemblPlantsGene:GSBRNA2T00135769001 | GO:A0A078C0R7 | ProteinID:CDX69734 | ProteinID:CDX69734.1 | SEG:seg |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0004EF3341 | MapMan:35.2 | : | : |
Description
BnaA10g20830D
Coordinates
chrLK031790:-:1562529..1563102
Molecular Weight (calculated)
6008.4 Da
IEP (calculated)
9.695
GRAVY (calculated)
1.394
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MAISKASVVA LVAVIISVVA TVASAQVEAP APSPTSGSAA FSPSIVSAGV AAVAALVFGS ALRI
1: MAISKASIVV LMMVIISVVA SAQSEAPAPS PTSGSSAISA SFVSAGVAAV AALVFGSALR I
Arabidopsis Description
AGP15ATAGP15 [Source:UniProtKB/TrEMBL;Acc:C0SVP3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.