Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 6
- vacuole 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G11740.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69734 | Canola | endoplasmic reticulum, extracellular, vacuole | 95.31 | 95.31 |
| Bra006115.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 92.19 | 92.19 |
| Bra023339.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 92.19 | 92.19 |
| AT5G11740.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 76.56 | 80.33 |
Protein Annotations
| EnsemblPlants:Bra008940.1 | EnsemblPlants:Bra008940.1-P | EnsemblPlantsGene:Bra008940 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000254410A | UniProt:M4CXJ3 | MapMan:35.2 |
Description
AT5G11740 (E=5e-018) AGP15, ATAGP15 | AGP15 (ARABINOGALACTAN PROTEIN 15)
Coordinates
chrA10:-:14497347..14497541
Molecular Weight (calculated)
6044.4 Da
IEP (calculated)
9.695
GRAVY (calculated)
1.322
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MAFSKSSVVA LVAVIVSVVA TVASAQVEAP APSPTSGSAA FSPSIVSAGV AAVAALVFGS ALRI
1: MAISKASIVV LMMVIISVVA SAQSEAPAPS PTSGSSAISA SFVSAGVAAV AALVFGSALR I
Arabidopsis Description
AGP15ATAGP15 [Source:UniProtKB/TrEMBL;Acc:C0SVP3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.