CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 3
mitochondrion 2
plasma membrane 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX88803
CDX89063
CDX89333
CDX92368
CDX94330
CDX97739
CDY09128
CDY30157
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24310.1	CDX97739	AT3G16310.1	21798944
AT4G24310.1	CDY30157	AT3G16310.1	21798944
AT4G24310.1	CDX67837	AT3G60600.1	21798944
AT4G24310.1	CDX71796	AT3G60600.1	21798944
AT4G24310.1	CDX89063	AT3G60600.1	21798944
AT4G24310.1	CDY41153	AT3G60600.1	21798944
AT4G24310.1	CDY48365	AT3G60600.1	21798944
AT4G24310.1	CDX89333	AT4G26455.1	21798944
AT4G24310.1	CDX94330	AT4G26455.1	21798944
AT4G24310.1	CDX70995	AT5G22290.1	21798944
AT4G24310.1	CDX88803	AT5G22290.1	21798944
AT4G24310.1	CDX92368	AT5G22290.1	21798944
AT4G24310.1	CDY09128	AT5G22290.1	21798944
AT4G24310.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013790.1-P	Field mustard	plasma membrane, plastid	100.0	100.0
CDY03457	Canola	plastid	97.73	99.54
AT4G24310.1	Thale cress	plastid	87.27	90.14
CDY08933	Canola	plasma membrane	85.45	85.07
CDY24837	Canola	plasma membrane, plastid	84.09	84.47
CDY34728	Canola	plasma membrane, plastid	67.73	67.42
CDY34726	Canola	cytosol, extracellular, peroxisome	44.55	61.25
Solyc01g103580.2.1	Tomato	plasma membrane	57.27	56.76
GSMUA_Achr7P23290_001	Banana	endoplasmic reticulum	55.91	56.42
PGSC0003DMT400064047	Potato	plasma membrane	55.91	53.95
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	57.73	53.14
Os08t0106501-01	Rice	plastid	51.36	50.45
TraesCS7D01G320400.1	Wheat	plastid	50.45	48.47
TraesCS7A01G324500.1	Wheat	plastid	49.55	48.02
TraesCS7B01G225000.1	Wheat	plastid	49.09	47.58
HORVU7Hr1G077620.2	Barley	plastid	50.91	46.09
Zm00001d034995_P001	Maize	plastid	45.45	42.55
CDY38623	Canola	plasma membrane	35.0	41.62
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	47.27	41.6
CDY55785	Canola	cytosol, peroxisome, plasma membrane	40.0	41.12
CDX76524	Canola	cytosol, peroxisome, plasma membrane	40.0	41.12
CDX76523	Canola	cytosol, peroxisome, plasma membrane	40.0	41.12
CDY44328	Canola	plasma membrane	34.55	41.08
CDX78854	Canola	cytosol, peroxisome, plasma membrane	40.91	40.18
CDY60883	Canola	cytosol	40.91	40.18
CDY37280	Canola	plasma membrane	33.64	40.0
CDY19288	Canola	extracellular, plasma membrane, vacuole	33.64	40.0
CDY38387	Canola	cytosol, endoplasmic reticulum, plasma membrane	35.0	38.5
CDY29909	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	35.0	38.5
CDX92877	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	35.0	38.5
CDY35189	Canola	cytosol, endoplasmic reticulum, plasma membrane	34.55	38.0
CDY38622	Canola	endoplasmic reticulum, plasma membrane, vacuole	35.0	37.75
CDY37281	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	34.55	37.62
CDY19287	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	33.64	36.63
CDY33452	Canola	plasma membrane	35.0	35.48
CDX77629	Canola	cytosol, peroxisome, plasma membrane	38.64	35.27
CDY70034	Canola	cytosol, peroxisome, plasma membrane	38.64	35.27
CDY34571	Canola	plasma membrane	34.09	34.56
CDX77630	Canola	plasma membrane	33.64	34.1
CDX74441	Canola	plastid	33.64	30.33
CDX81135	Canola	plastid	31.82	28.93
CDY56548	Canola	plastid	31.82	28.93
CDY38243	Canola	cytosol	17.27	27.94
CDY30259	Canola	plastid	15.45	25.56
CDY44329	Canola	endoplasmic reticulum, extracellular, vacuole	4.55	22.22

Protein Annotations

EnsemblPlants:CDY34278	EnsemblPlantsGene:GSBRNA2T00056309001	GO:A0A078HBW7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DMP	PANTHER:PTHR31621	PANTHER:PTHR31621:SF10	PFAM:PF05078	ProteinID:CDY34278	ProteinID:CDY34278.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002546288	UniProt:A0A078HBW7	MapMan:35.1	:

Description

BnaA01g13810DBnaA01g13810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBW7]

Coordinates

chrLK032332:+:112009..112671

Molecular Weight (calculated)

23784.9 Da

IEP (calculated)

9.657

GRAVY (calculated)

0.128

Length

220 amino acids

Sequence
(BLAST)

001: MSSSSSLTQR NPTISQEPSD SPPPPPPPPQ LRRQPSISQH AVSQTLTSVA NLANLLPTGT LLAFQFLIPV FTSNGSCKYS TRVLTAVLLT LLSISCFLSS
101: FTDSVKAEDG NVYYGFATRK GMWVFDYPDP SGLGLPDLSK YRIRIVDWIH AVLSVLVFGA VALREKNAVS CFYPAPEQGT KKVLDIVPMG VGVICGLLFL
201: VFPARRHGIG YPVTGNGGRR

Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)

001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR

Arabidopsis Description

DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.