CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023875.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid, vacuole	98.02	98.02
CDY37281	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	98.02	98.02
CDY38622	Canola	endoplasmic reticulum, plasma membrane, vacuole	87.62	86.76
AT3G21520.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	88.61	86.47
CDY44329	Canola	endoplasmic reticulum, extracellular, vacuole	16.34	73.33
CDY37280	Canola	plasma membrane	44.06	48.11
CDY19288	Canola	extracellular, plasma membrane, vacuole	44.06	48.11
CDY38623	Canola	plasma membrane	43.07	47.03
CDY44328	Canola	plasma membrane	42.08	45.95
Os07t0645300-01	Rice	plasma membrane, vacuole	41.58	44.68
Zm00001d007047_P001	Maize	golgi, plasma membrane, vacuole	41.58	44.21
HORVU5Hr1G034760.1	Barley	plasma membrane	23.76	44.04
TraesCS2D01G145200.1	Wheat	cytosol, peroxisome, vacuole	44.06	42.18
TraesCS2B01G166900.1	Wheat	cytosol, plasma membrane, vacuole	44.06	41.78
TraesCS2A01G141700.1	Wheat	cytosol, peroxisome, vacuole	43.56	41.71
HORVU2Hr1G025080.1	Barley	cytosol, peroxisome, vacuole	42.57	40.57
EER97642	Sorghum	peroxisome	43.07	39.37
CDY03457	Canola	plastid	36.14	33.8
CDY24837	Canola	plasma membrane, plastid	36.63	33.79
CDX76524	Canola	cytosol, peroxisome, plasma membrane	35.64	33.64
CDY55785	Canola	cytosol, peroxisome, plasma membrane	35.64	33.64
CDX76523	Canola	cytosol, peroxisome, plasma membrane	35.64	33.64
CDY34278	Canola	plasma membrane, plastid	36.63	33.64
CDY08933	Canola	plasma membrane	36.14	33.03
CDX92877	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	32.18	32.5
CDY29909	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	32.18	32.5
CDY34728	Canola	plasma membrane, plastid	35.15	32.13
CDY38387	Canola	cytosol, endoplasmic reticulum, plasma membrane	31.68	32.0
CDX78854	Canola	cytosol, peroxisome, plasma membrane	35.15	31.7
CDY35189	Canola	cytosol, endoplasmic reticulum, plasma membrane	31.19	31.5
CDY60883	Canola	cytosol	34.65	31.25
CDY33452	Canola	plasma membrane	31.68	29.49
CDY34571	Canola	plasma membrane	30.69	28.57
CDY34726	Canola	cytosol, extracellular, peroxisome	22.28	28.12
CDX77630	Canola	plasma membrane	30.2	28.11
CDY70034	Canola	cytosol, peroxisome, plasma membrane	31.68	26.56
CDX74441	Canola	plastid	31.68	26.23
CDX77629	Canola	cytosol, peroxisome, plasma membrane	31.19	26.14
CDX81135	Canola	plastid	30.69	25.62
CDY56548	Canola	plastid	30.2	25.21
CDY30259	Canola	plastid	14.36	21.8
CDY38243	Canola	cytosol	12.87	19.12

Protein Annotations

EnsemblPlants:CDY19287	EnsemblPlantsGene:GSBRNA2T00006624001	GO:A0A078G2M9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DMP	PANTHER:PTHR31621	PANTHER:PTHR31621:SF1	PFAM:PF05078	ProteinID:CDY19287	ProteinID:CDY19287.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EC91B5	UniProt:A0A078G2M9	MapMan:35.1	:

Description

BnaC01g31930DBnaC01g31930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2M9]

Coordinates

chrLK032094:+:217789..218397

Molecular Weight (calculated)

21687.4 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.302

Length

202 amino acids

Sequence
(BLAST)

001: MSEASSLLIP KTNSPVSSKL MANKSLTGLE SLIKLLPTGT LFIYLLLNPV LTNDGECSTA NKVMSSILIA LCSFSCVFSC FTDSFKGTDG SRKYGIVTKT
101: GLWTYANPGS VDLSKYKLRI ADFVHAVFVV AVFETLVLLD ANTASCFYPR FRETQKTLIM ALPPVVGVAS AAIFAIFPSK RNGIGYAPVG EEEETKKGSD
201: SA

Best Arabidopsis Sequence Match ( AT3G21520.1 )
(BLAST)

001: MSETSLLIPK TNSPASSENM ANTNKSLTGL ESLIKLLPTG TLFIYLLLNP VLTNDGECST GNKVMSSILV ALCSFSCVFS CFTDSFKGVD GSRKFGIVTK
101: KGLWTYAEPG SVDLSKYKLR IADFVHAGFV LAVFGTLVLL DANTASCFYP RFRETQKTLV MALPPAVGVA SATIFALFPS KRSGIGYAPI AEEVGAEEET
201: KKASVSA

Arabidopsis Description

DMP1Protein DMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVF4]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.