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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76523 Canola cytosol, peroxisome, plasma membrane 100.0 100.0
CDX76524 Canola cytosol, peroxisome, plasma membrane 99.07 99.07
Bra021010.1-P Field mustard cytosol, peroxisome, plasma membrane 97.66 97.66
AT4G18425.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane 87.38 87.79
CDY60883 Canola cytosol 91.59 87.5
CDX78854 Canola cytosol, peroxisome, plasma membrane 91.12 87.05
CDY33452 Canola plasma membrane 66.36 65.44
CDX77629 Canola cytosol, peroxisome, plasma membrane 72.9 64.73
PGSC0003DMT400081227 Potato plasma membrane 63.08 64.59
CDY70034 Canola cytosol, peroxisome, plasma membrane 72.43 64.32
CDX77630 Canola plasma membrane 64.95 64.06
CDY34571 Canola plasma membrane 64.95 64.06
Solyc02g077640.1.1 Tomato plasma membrane 60.75 62.2
VIT_13s0106g00720.t01 Wine grape plasma membrane 61.22 62.09
KRH21356 Soybean cytosol, peroxisome, plasma membrane 58.41 59.24
GSMUA_Achr4P10580_001 Banana cytosol 55.14 56.73
GSMUA_Achr4P02720_001 Banana plasma membrane 55.14 55.92
KRH20387 Soybean plasma membrane 56.07 55.3
CDY38243 Canola cytosol 35.05 55.15
VIT_10s0003g00320.t01 Wine grape plasma membrane 60.75 53.06
TraesCS3B01G273700.1 Wheat cytosol, peroxisome, plasma membrane 42.52 48.66
KXG33079 Sorghum cytosol, endoplasmic reticulum, plasma membrane 47.2 48.56
KRH50120 Soybean peroxisome 47.2 48.56
TraesCS3D01G245600.1 Wheat cytosol, peroxisome, plasma membrane 47.2 47.2
Zm00001d011558_P001 Maize cytosol, endoplasmic reticulum, peroxisome 45.33 46.63
TraesCS3A01G245800.1 Wheat cytosol, peroxisome, plasma membrane 46.73 45.87
CDY38387 Canola cytosol, endoplasmic reticulum, plasma membrane 42.52 45.5
Os05t0562800-02 Rice plastid 50.47 45.38
HORVU1Hr1G087380.1 Barley mitochondrion 51.87 45.31
CDY35189 Canola cytosol, endoplasmic reticulum, plasma membrane 41.59 44.5
CDY29909 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 41.59 44.5
CDX92877 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 41.12 44.0
CDY24837 Canola plasma membrane, plastid 43.93 42.92
CDY34728 Canola plasma membrane, plastid 43.93 42.53
CDY08933 Canola plasma membrane 42.52 41.18
CDY03457 Canola plastid 41.12 40.74
CDY44328 Canola plasma membrane 35.05 40.54
CDY34278 Canola plasma membrane, plastid 41.12 40.0
CDY38623 Canola plasma membrane 34.11 39.46
CDY19288 Canola extracellular, plasma membrane, vacuole 33.64 38.92
CDY37280 Canola plasma membrane 33.64 38.92
Os06t0352200-01 Rice plasma membrane, plastid 45.33 38.34
CDY37281 Canola endoplasmic reticulum, plasma membrane, plastid, vacuole 34.58 36.63
CDY19287 Canola endoplasmic reticulum, plasma membrane, plastid, vacuole 33.64 35.64
CDY38622 Canola endoplasmic reticulum, plasma membrane, vacuole 33.18 34.8
CDY34726 Canola cytosol, extracellular, peroxisome 24.77 33.12
CDY44329 Canola endoplasmic reticulum, extracellular, vacuole 6.54 31.11
CDX74441 Canola plastid 34.11 29.92
CDX81135 Canola plastid 33.18 29.34
CDY30259 Canola plastid 18.22 29.32
CDY56548 Canola plastid 32.71 28.93
Protein Annotations
EnsemblPlants:CDY55785EnsemblPlantsGene:GSBRNA2T00017346001GO:A0A078CN99InterPro:DMPPANTHER:PTHR31621PANTHER:PTHR31621:SF0
PFAM:PF05078ProteinID:CDY55785ProteinID:CDY55785.1TMHMM:TMhelixUniParc:UPI0004EF1D67UniProt:A0A078CN99
MapMan:35.1:::::
Description
BnaC03g76810DBnaA08g08770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CN99]
Coordinates
chrLK033428:-:43210..43854
Molecular Weight (calculated)
23526.4 Da
IEP (calculated)
4.788
GRAVY (calculated)
0.279
Length
214 amino acids
Sequence
(BLAST)
001: MEIKVVEDHQ LSTKEDIETP LLEENKDFPD VERTTWIQKA IGQTFQTTAH LANLLPTGTV LAFQLLSPIF SNGGQCDLAC KIMTSSLVAI CGFSCFILSF
101: TDSYKDKNGT ICYGFATIHG FWIIDGSATL PQELAKNYKL RFIDFAHAFM SLLVFGAVVL FDRNTVNCFY PAPSAEELEV LTALPVGVGV FCSMLFATFP
201: TTRNGIGFPV PGNK
Best Arabidopsis Sequence Match ( AT4G18425.1 )
(BLAST)
001: MEIKVDEGHQ KGTKEDITRP LLEEDKDFPD IERTTWIQKA IGQTFQTTAH LANLLPTGTV LAFQLLSPIF SNGGQCDLVS KIMTSTLVAI CGFSCFILSF
101: TDSYKDKNGT ICYGLATIHG FWIIDGSTTL PQELSKRYKL RFIDFVHAFM SLFVFGAVVL FDRNAVNCFF PSPSAEALEV LTALPVGVGV FSSMLFATFP
201: TTRNGIGFPL SSK
Arabidopsis Description
DMP4Protein DMP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L928]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.