Factsheet for VIT_10s0003g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
plasma membrane 3
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00720.t01	Wine grape	plasma membrane	67.35	78.2
PGSC0003DMT400081227	Potato	plasma membrane	59.59	69.86
Solyc02g077640.1.1	Tomato	plasma membrane	57.96	67.94
KRH21356	Soybean	cytosol, peroxisome, plasma membrane	55.51	64.45
KRH20387	Soybean	plasma membrane	56.33	63.59
CDY55785	Canola	cytosol, peroxisome, plasma membrane	53.06	60.75
CDX76524	Canola	cytosol, peroxisome, plasma membrane	53.06	60.75
AT5G46090.1	Thale cress	plasma membrane	53.06	60.75
Bra021010.1-P	Field mustard	cytosol, peroxisome, plasma membrane	53.06	60.75
CDX76523	Canola	cytosol, peroxisome, plasma membrane	53.06	60.75
GSMUA_Achr4P02720_001	Banana	plasma membrane	52.24	60.66
GSMUA_Achr4P10580_001	Banana	cytosol	51.02	60.1
AT4G18425.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	51.84	59.62
CDY60883	Canola	cytosol	53.88	58.93
Bra013307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	53.88	58.93
CDX78854	Canola	cytosol, peroxisome, plasma membrane	53.88	58.93
Bra025039.1-P	Field mustard	plasma membrane	51.02	57.6
CDY33452	Canola	plasma membrane	50.61	57.14
KRH50120	Soybean	peroxisome	47.76	56.25
CDY34571	Canola	plasma membrane	49.39	55.76
CDX77630	Canola	plasma membrane	49.39	55.76
VIT_12s0028g03070.t01	Wine grape	plasma membrane	48.57	55.61
KXG33079	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	46.53	54.81
CDX77629	Canola	cytosol, peroxisome, plasma membrane	53.88	54.77
Bra025040.1-P	Field mustard	cytosol, peroxisome, plasma membrane	53.88	54.77
CDY70034	Canola	cytosol, peroxisome, plasma membrane	53.88	54.77
TraesCS3B01G273700.1	Wheat	cytosol, peroxisome, plasma membrane	41.63	54.55
Zm00001d011558_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	44.9	52.88
TraesCS3D01G245600.1	Wheat	cytosol, peroxisome, plasma membrane	44.9	51.4
TraesCS3A01G245800.1	Wheat	cytosol, peroxisome, plasma membrane	45.31	50.92
Os05t0562800-02	Rice	plastid	48.16	49.58
HORVU1Hr1G087380.1	Barley	mitochondrion	48.16	48.16
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	43.27	44.35
VIT_05s0020g02280.t01	Wine grape	plastid	33.88	43.23
CDY38243	Canola	cytosol	23.67	42.65
Os06t0352200-01	Rice	plasma membrane, plastid	40.0	38.74
VIT_14s0108g00920.t01	Wine grape	plastid	31.84	36.45
VIT_18s0086g00700.t01	Wine grape	plasma membrane	27.76	31.92

Protein Annotations

EntrezGene:100262407	wikigene:100262407	MapMan:35.1	ProteinID:CCB55626	ProteinID:CCB55626.1	InterPro:DMP
UniProt:F6HM38	EMBL:FN595992	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005783	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0010256
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	EntrezGene:LOC100262407	wikigene:LOC100262407	PFAM:PF05078
PANTHER:PTHR31621	PANTHER:PTHR31621:SF0	TMHMM:TMhelix	UniParc:UPI0002109E54	ArrayExpress:VIT_10s0003g00320	EnsemblPlantsGene:VIT_10s0003g00320
EnsemblPlants:VIT_10s0003g00320.t01	unigene:Vvi.22112	RefSeq:XP_002278769	RefSeq:XP_002278769.1	:	:

Description

No Description!

Coordinates

chr10:-:1606475..1609477

Molecular Weight (calculated)

27517.4 Da

IEP (calculated)

6.768

GRAVY (calculated)

0.061

Length

245 amino acids

Sequence
(BLAST)

001: MILIRQKCKH SFLHGIKSPT GIERKKEENK RFRAMEFKVE DEESWHLNDQ KVALLQDMPR PQTGQRTPIQ MAISQTFQST AHLANLLPTG TVLAFQFLSP
101: VLTNKGECDP VSRFMTSSLL ALCGMSCFLQ CFTDSFRDNN GNVYSGFATF QGLWIIDGSA TLPPELAAEY QLRFIDFIHA FMSILVFAAI ALFDENVVNC
201: FYPTPSDETK ELLTSLPVGI GVFCSMLFVV FPTRRHGIGF PLSAN

Best Arabidopsis Sequence Match ( AT5G46090.1 )
(BLAST)

001: MEINVDEEAG IIKEETVPLL DDQNRNRDLP DIERNTMMQK AIGKTFQTTA NLANLLPTGT VLAFQILSPI CTNVGRCDLT SRFMTALLVS ICGFSCFILS
101: FTDSYKDLNG SVCYGFATIH GFWIIDGSAT LPQELSKSYK LRFIDFVHAI MSFLVFGAVV LFDQNVVNCF YPEPSAEVVE LLTTLPVAVG VFCSMVFAKF
201: PTTRHGIGFP LSAK

Arabidopsis Description

DMP6Protein DMP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNL3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.