Factsheet for VIT_12s0035g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_15s0048g00220.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24310.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT4G24310.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT4G24310.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944
AT4G24310.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103580.2.1	Tomato	plasma membrane	58.58	63.06
GSMUA_Achr7P23290_001	Banana	endoplasmic reticulum	56.49	61.93
Bra010492.1-P	Field mustard	plastid	56.07	61.19
PGSC0003DMT400064047	Potato	plasma membrane	58.16	60.96
CDY24837	Canola	plasma membrane, plastid	55.65	60.73
CDY08933	Canola	plasma membrane	55.23	59.73
CDY03457	Canola	plastid	53.14	58.8
AT4G24310.1	Thale cress	plastid	52.3	58.69
Os08t0106501-01	Rice	plastid	54.81	58.48
CDY34728	Canola	plasma membrane, plastid	53.97	58.37
Bra021460.1-P	Field mustard	plasma membrane, plastid	53.56	57.92
CDY34278	Canola	plasma membrane, plastid	53.14	57.73
Bra013790.1-P	Field mustard	plasma membrane, plastid	53.14	57.73
AT3G02430.1	Thale cress	plastid	52.3	57.08
TraesCS7A01G324500.1	Wheat	plastid	51.46	54.19
TraesCS7D01G320400.1	Wheat	plastid	51.88	54.15
TraesCS7B01G225000.1	Wheat	plastid	51.05	53.74
HORVU7Hr1G077620.2	Barley	plastid	51.88	51.03
VIT_13s0106g00720.t01	Wine grape	plasma membrane	44.35	50.24
Zm00001d034995_P001	Maize	plastid	49.37	50.21
CDY34726	Canola	cytosol, extracellular, peroxisome	33.05	49.38
Bra021461.1-P	Field mustard	cytosol, extracellular, peroxisome	33.05	49.38
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	48.12	46.0
VIT_10s0003g00320.t01	Wine grape	plasma membrane	44.35	43.27
VIT_05s0020g02280.t01	Wine grape	plastid	34.73	43.23
VIT_12s0028g03070.t01	Wine grape	plasma membrane	38.49	42.99
VIT_14s0108g00920.t01	Wine grape	plastid	33.47	37.38
VIT_18s0086g00700.t01	Wine grape	plasma membrane	32.64	36.62

Protein Annotations

EntrezGene:100244061	MapMan:35.1	ProteinID:CCB55048	ProteinID:CCB55048.1	InterPro:DMP	UniProt:F6HK45
EMBL:FN595990	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005783	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0010256	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	PFAM:PF05078	PANTHER:PTHR31621	PANTHER:PTHR31621:SF10	TMHMM:TMhelix
UniParc:UPI00021087F5	ArrayExpress:VIT_12s0035g00920	EnsemblPlantsGene:VIT_12s0035g00920	EnsemblPlants:VIT_12s0035g00920.t01	RefSeq:XP_010657994.2	SEG:seg

Description

No Description!

Coordinates

chr12:-:20537627..20538867

Molecular Weight (calculated)

25916.2 Da

IEP (calculated)

6.765

GRAVY (calculated)

0.248

Length

239 amino acids

Sequence
(BLAST)

001: MALRARPVTS KQPSESEETL KITQTSSSDD EEVSDLPKPY SSLSPPPSPS SSAPSTLRQR ALSQTLASTA NLANLLPTGT LLAFQLLTPV FTNNGACDAV
101: TRSLTLILLL LLAFSCFLFS FTDSFKTPDG RVFYGIATFK GLWLFDYVDE SGSAASLPDL SKYKFRFIDG VHAVLSVLVF VAVAMRDKNV VSCFYPQPAR
201: EVQEVLDIVP VGIGLICSLL FVVFPTTRHG IGYPVTHAK

Best Arabidopsis Sequence Match ( AT3G02430.1 )
(BLAST)

001: MSALRLRNAN TPAPELDELS DQTPSESRVL KRQMSMSQRA MSNTLTSAAN LSNLLPTGTL LAFQLLTPVF TSNGVCDHAT RFLTAVLLFL LAASCFVSSF
101: TDSVKADDGT IYFGFVTFKG MWVVDYPDPS GLGLPDLAKY RMRFVDWIHA TLSVLVFGAV ALRDKYITDC FYPSPEAETK HVLDIVPVGV GVMCSLLFMV
201: FPARRHGIGY LVTGSVDRR

Arabidopsis Description

DMP5Protein DMP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M897]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.