Factsheet for Zm00001d034995_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d017390_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d038803_P001
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24310.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT4G24310.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT4G24310.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT4G24310.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT4G24310.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT4G24310.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT4G24310.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT4G24310.1	Zm00001d051288_P001	AT3G60600.1	21798944
AT4G24310.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT4G24310.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT4G24310.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT4G24310.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	80.85	76.0
TraesCS7A01G324500.1	Wheat	plastid	66.38	68.72
TraesCS7B01G225000.1	Wheat	plastid	65.96	68.28
TraesCS7D01G320400.1	Wheat	plastid	66.38	68.12
HORVU7Hr1G077620.2	Barley	plastid	64.68	62.55
Os08t0106501-01	Rice	plastid	57.02	59.82
GSMUA_Achr7P23290_001	Banana	endoplasmic reticulum	47.66	51.38
Solyc01g103580.2.1	Tomato	plasma membrane	48.09	50.9
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	50.21	49.37
PGSC0003DMT400064047	Potato	plasma membrane	47.66	49.12
AT4G24310.1	Thale cress	plastid	43.4	47.89
CDY24837	Canola	plasma membrane, plastid	43.4	46.58
Bra010492.1-P	Field mustard	plastid	43.4	46.58
CDY03457	Canola	plastid	42.55	46.3
CDY08933	Canola	plasma membrane	43.4	46.15
CDY34278	Canola	plasma membrane, plastid	42.55	45.45
Bra013790.1-P	Field mustard	plasma membrane, plastid	42.55	45.45
AT3G02430.1	Thale cress	plastid	41.28	44.29
CDY34728	Canola	plasma membrane, plastid	40.85	43.44
Bra021460.1-P	Field mustard	plasma membrane, plastid	40.85	43.44
Zm00001d047420_P001	Maize	plasma membrane	32.34	40.43
CDY34726	Canola	cytosol, extracellular, peroxisome	26.38	38.75
Bra021461.1-P	Field mustard	cytosol, extracellular, peroxisome	26.38	38.75
Zm00001d044822_P001	Maize	plastid	33.19	38.05
Zm00001d016492_P001	Maize	cytosol, plasma membrane, vacuole	33.62	37.44
Zm00001d011558_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	32.34	36.54
Zm00001d007047_P001	Maize	golgi, plasma membrane, vacuole	29.36	36.32
Zm00001d046149_P001	Maize	plastid	37.45	34.65
Zm00001d008235_P001	Maize	golgi, peroxisome, plasma membrane	32.77	33.92
Zm00001d009557_P001	Maize	cytosol	33.62	33.47
Zm00001d045826_P001	Maize	plasma membrane	25.11	32.6
Zm00001d044777_P001	Maize	plastid	35.32	32.55
Zm00001d044435_P001	Maize	cytosol, plastid, vacuole	33.19	30.95
Zm00001d012217_P001	Maize	plasma membrane	29.36	26.95
Zm00001d037387_P001	Maize	cytosol	30.64	25.62

Protein Annotations

EMBL:BT063718	EMBL:EU967288	EnsemblPlants:Zm00001d034995_P001	EnsemblPlants:Zm00001d034995_T001	EnsemblPlantsGene:Zm00001d034995	EntrezGene:100277191
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DMP	PANTHER:PTHR31621	PANTHER:PTHR31621:SF10
PFAM:PF05078	ProteinID:AQK78041.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000182E202	UniProt:B6TQM3
MapMan:35.1	:	:	:	:	:

Description

DUF679 domain membrane protein 7

Coordinates

chr6:+:1301118..1301916

Molecular Weight (calculated)

24129.8 Da

IEP (calculated)

6.661

GRAVY (calculated)

0.306

Length

235 amino acids

Sequence
(BLAST)

001: MASSPPSSAS LRQRPAAAAA TPDQQHEPPR LEDGLLPNQG GSPATSALSQ ALSSTANLAN LLPTGTLLAF NLLAPTFTNH GACDATTSLL TRGLLALLAL
101: ASALACFTDS LKSPHDGRVY YGVATRTGLW LIDYPPGAPP LPEGATGRYR LAFIDFVHAA LSAAVFGVVA ARDRDVVVCL YGPTPDRATQ DLLDVLPLGV
201: GVLCSLLFVA FPTTRHGIGY PVVANAVAAA TATSS

Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)

001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR

Arabidopsis Description

DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.