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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
TargetP:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G076010.1
HORVU2Hr1G081800.3
HORVU2Hr1G091830.4
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU5Hr1G071910.1
HORVU6Hr1G060760.3
HORVU7Hr1G048940.3
HORVU7Hr1G071270.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G24310.1 HORVU1Hr1G076010.1 AT3G16310.1 21798944
AT4G24310.1 HORVU3Hr1G026980.2 AT3G16310.1 21798944
AT4G24310.1 HORVU3Hr1G071060.1 AT3G16310.1 21798944
AT4G24310.1 HORVU2Hr1G091830.4 AT3G60600.1 21798944
AT4G24310.1 HORVU6Hr1G060760.3 AT3G60600.1 21798944
AT4G24310.1 HORVU7Hr1G071270.2 AT3G60600.1 21798944
AT4G24310.1 HORVU2Hr1G081800.3 AT4G26455.1 21798944
AT4G24310.1 HORVU5Hr1G071910.1 AT4G26455.1 21798944
AT4G24310.1 HORVU7Hr1G048940.3 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G324500.1 Wheat plastid 89.71 96.04
TraesCS7B01G225000.1 Wheat plastid 88.89 95.15
TraesCS7D01G320400.1 Wheat plastid 89.3 94.76
Os08t0106501-01 Rice plastid 62.55 67.86
EES14365 Sorghum cytosol, endoplasmic reticulum, mitochondrion, plastid 67.49 65.6
Zm00001d034995_P001 Maize plastid 62.55 64.68
GSMUA_Achr7P23290_001 Banana endoplasmic reticulum 48.15 53.67
AT4G24310.1 Thale cress plastid 45.68 52.11
VIT_12s0035g00920.t01 Wine grape cytosol, endoplasmic reticulum, peroxisome 51.03 51.88
CDY03457 Canola plastid 46.09 51.85
Solyc01g103580.2.1 Tomato plasma membrane 47.33 51.8
CDY24837 Canola plasma membrane, plastid 46.09 51.14
CDY34278 Canola plasma membrane, plastid 46.09 50.91
Bra013790.1-P Field mustard plasma membrane, plastid 46.09 50.91
Bra010492.1-P Field mustard plastid 45.68 50.68
CDY08933 Canola plasma membrane 46.09 50.68
PGSC0003DMT400064047 Potato plasma membrane 46.91 50.0
AT3G02430.1 Thale cress plastid 44.03 48.86
CDY34728 Canola plasma membrane, plastid 43.21 47.51
Bra021460.1-P Field mustard plasma membrane, plastid 43.21 47.51
HORVU7Hr1G100090.1 Barley plasma membrane 31.28 39.38
HORVU5Hr1G034760.1 Barley plasma membrane 17.28 38.53
CDY34726 Canola cytosol, extracellular, peroxisome 25.1 38.12
Bra021461.1-P Field mustard cytosol, extracellular, peroxisome 25.1 38.12
HORVU6Hr1G022610.1 Barley plasma membrane 32.51 37.26
HORVU1Hr1G087380.1 Barley mitochondrion 36.63 36.33
HORVU7Hr1G119740.2 Barley plasma membrane 30.45 35.58
HORVU6Hr1G090450.1 Barley plastid 32.92 34.93
HORVU2Hr1G025080.1 Barley cytosol, peroxisome, vacuole 30.45 34.91
HORVU1Hr1G067430.1 Barley mitochondrion 32.51 34.8
HORVU6Hr1G090460.1 Barley plastid 33.74 33.74
HORVU7Hr1G110570.1 Barley cytosol, peroxisome, plastid 33.33 32.66
HORVU6Hr1G090420.1 Barley cytosol, plasma membrane, plastid, vacuole 32.51 31.73
HORVU2Hr1G027720.1 Barley mitochondrion, plastid 29.22 31.28
HORVU7Hr1G119790.1 Barley cytosol, vacuole 31.69 29.17
HORVU7Hr1G119710.1 Barley cytosol, plasma membrane, plastid 28.4 29.11
HORVU5Hr1G118360.1 Barley cytosol, peroxisome, plasma membrane 27.57 28.39
Protein Annotations
EnsemblPlants:HORVU7Hr1G077620.2EnsemblPlantsGene:HORVU7Hr1G077620GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:DMP
PANTHER:PTHR31621PANTHER:PTHR31621:SF10PFAM:PF05078SEG:segTMHMM:TMhelixUniParc:UPI000B46FBE3
UniProt:A0A287WZG4MapMan:35.1::::
Description
No Description!
Coordinates
chrchr7H:-:455900289..455901096
Molecular Weight (calculated)
25274.2 Da
IEP (calculated)
7.973
GRAVY (calculated)
0.204
Length
243 amino acids
Sequence
(BLAST)
001: SATSQSNHAQ QSIMAAASST SAVSVRQRTA AAASPLLQDQ QQEKHQDGAV DPVPPPPAPR STLYQALTST ASLANLLPTG TVLAFQLLAP AFTNHGACDA
101: TTALLTRILL AVLALSCLLA SFTDSLKGPD GRVYYGVATL RGLWLLDYPP AAPTPPDTAR YRLAPIDAVH AALSVAVFGV VAARDKNVVR CFYGPSPARE
201: TEEVLDIVPL GVGVLCSLLF VAFPTRRHGI GYPVTNGASG SST
Best Arabidopsis Sequence Match ( AT4G24310.1 )
(BLAST)
001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR
Arabidopsis Description
DMP3Protein DMP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STW3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.