CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 3
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021460.1-P	Field mustard	plasma membrane, plastid	99.55	99.55
AT3G02430.1	Thale cress	plastid	85.52	86.3
CDY34726	Canola	cytosol, extracellular, peroxisome	55.66	76.88
CDY24837	Canola	plasma membrane, plastid	69.23	69.86
CDY03457	Canola	plastid	67.42	68.98
CDY08933	Canola	plasma membrane	68.78	68.78
CDY34278	Canola	plasma membrane, plastid	67.42	67.73
Solyc01g103580.2.1	Tomato	plasma membrane	54.75	54.5
VIT_12s0035g00920.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	58.37	53.97
GSMUA_Achr7P23290_001	Banana	endoplasmic reticulum	52.49	53.21
PGSC0003DMT400064047	Potato	plasma membrane	53.39	51.75
Os08t0106501-01	Rice	plastid	49.77	49.11
TraesCS7D01G320400.1	Wheat	plastid	47.96	46.29
TraesCS7A01G324500.1	Wheat	plastid	47.06	45.81
TraesCS7B01G225000.1	Wheat	plastid	46.61	45.37
CDX76524	Canola	cytosol, peroxisome, plasma membrane	42.53	43.93
CDY55785	Canola	cytosol, peroxisome, plasma membrane	42.53	43.93
CDX76523	Canola	cytosol, peroxisome, plasma membrane	42.53	43.93
HORVU7Hr1G077620.2	Barley	plastid	47.51	43.21
CDY60883	Canola	cytosol	41.63	41.07
CDX78854	Canola	cytosol, peroxisome, plasma membrane	41.63	41.07
CDY29909	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	37.1	41.0
Zm00001d034995_P001	Maize	plastid	43.44	40.85
CDX92877	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	36.65	40.5
CDY33452	Canola	plasma membrane	38.91	39.63
CDY38387	Canola	cytosol, endoplasmic reticulum, plasma membrane	35.75	39.5
CDY35189	Canola	cytosol, endoplasmic reticulum, plasma membrane	35.29	39.0
EES14365	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	43.89	38.8
CDX77630	Canola	plasma membrane	38.01	38.71
CDY34571	Canola	plasma membrane	38.01	38.71
CDX77629	Canola	cytosol, peroxisome, plasma membrane	42.08	38.59
CDY70034	Canola	cytosol, peroxisome, plasma membrane	42.08	38.59
CDY38623	Canola	plasma membrane	32.13	38.38
CDY44328	Canola	plasma membrane	32.13	38.38
CDY37280	Canola	plasma membrane	30.77	36.76
CDY37281	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	33.03	36.14
CDY38622	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.03	35.78
CDY19288	Canola	extracellular, plasma membrane, vacuole	29.86	35.68
CDY19287	Canola	endoplasmic reticulum, plasma membrane, plastid, vacuole	32.13	35.15
CDY38243	Canola	cytosol	19.46	31.62
CDX74441	Canola	plastid	33.94	30.74
CDX81135	Canola	plastid	32.58	29.75
CDY56548	Canola	plastid	32.13	29.34
CDY30259	Canola	plastid	17.19	28.57
CDY44329	Canola	endoplasmic reticulum, extracellular, vacuole	4.52	22.22

Protein Annotations

EnsemblPlants:CDY34728	EnsemblPlantsGene:GSBRNA2T00057256001	GO:A0A078HD49	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DMP	PANTHER:PTHR31621	PANTHER:PTHR31621:SF10	PFAM:PF05078	ProteinID:CDY34728	ProteinID:CDY34728.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE3116	UniProt:A0A078HD49	MapMan:35.1	:

Description

BnaA01g32970DBnaA01g32970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD49]

Coordinates

chrLK032340:+:259017..259682

Molecular Weight (calculated)

24300.4 Da

IEP (calculated)

8.311

GRAVY (calculated)

0.197

Length

221 amino acids

Sequence
(BLAST)

001: MSALKLRNAN FPAPEIDDLS KQLSSDRQPL VLKRQRSVSQ RAMSNTLTSA ANLSNLLPTG TLLAFQLLTP VFTSNGVCDH ATRFLTAGLL FLLAASCFIS
101: SFTDSVKTDN GTVYYGFVTF NGMWVVDYAD PSGLGLPDLS KYRMRFVDWI HATLSVLVFG AVALRDKYVT DCFYPSPEEE TKHVLDIVPV GIGVICSLLF
201: TVFPTRRLGI GYLVTGNGDR R

Best Arabidopsis Sequence Match ( AT3G02430.1 )
(BLAST)

001: MSALRLRNAN TPAPELDELS DQTPSESRVL KRQMSMSQRA MSNTLTSAAN LSNLLPTGTL LAFQLLTPVF TSNGVCDHAT RFLTAVLLFL LAASCFVSSF
101: TDSVKADDGT IYFGFVTFKG MWVVDYPDPS GLGLPDLAKY RMRFVDWIHA TLSVLVFGAV ALRDKYITDC FYPSPEAETK HVLDIVPVGV GVMCSLLFMV
201: FPARRHGIGY LVTGSVDRR

Arabidopsis Description

DMP5Protein DMP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M897]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.